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1
vote
2
replies
578
views
Too many DEGs
deseq2
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 20
0
votes
0
replies
6.5k
views
Comment: C: DESeq2 GLM modelling and Wald's test
5.1 years ago Raymond ▴ 20
3
votes
3
replies
1.1k
views
How to decide whether a variate should be in the model or not
deseq2 rnaseq
updated 16 months ago by 42k • written 5.6 years ago by ▴ 20
0
votes
0
replies
611
views
Comment: C: Any way to get a p-value for multiple comparisons in DESeq2?
5.7 years ago Raymond ▴ 20
1
vote
2
replies
611
views
Any way to get a p-value for multiple comparisons in DESeq2?
deseq2
updated 5.7 years ago by 42k • written 5.7 years ago by ▴ 20
0
votes
0
replies
929
views
Comment: C: Any difference between v$E and cpm(keep,log=TRUE)
5.7 years ago Raymond ▴ 20
0
votes
2
replies
929
views
Any difference between v$E and cpm(keep,log=TRUE)
limma
updated 5.7 years ago by 51k • written 5.7 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: PCA plot of variance stabilized transformation of normalized counts in limma
5.7 years ago Raymond ▴ 20
0
votes
1
reply
2.1k
views
Comment: C: PCA plot of variance stabilized transformation of normalized counts in limma
5.7 years ago Raymond ▴ 20
0
votes
4
replies
2.1k
views
PCA plot of variance stabilized transformation of normalized counts in limma
limma-voom deseq2 EdgeR
updated 5.7 years ago by ★ 13k • written 5.7 years ago by ▴ 20
0
votes
0
replies
1.3k
views
Comment: C: DESeq2 got stuck for one night, restarting?
5.8 years ago Raymond ▴ 20
0
votes
2
replies
1.3k
views
DESeq2 got stuck for one night, restarting?
deseq2 rnaseq
updated 5.8 years ago by 42k • written 5.8 years ago by ▴ 20
0
votes
1
reply
3.3k
views
Comment: C: Simultaneously adding two different covariates in the model gives error in DESeq
5.8 years ago Raymond ▴ 20
0
votes
1
reply
588
views
DESeq2 with too many rejections
deseq2
updated 5.9 years ago by 42k • written 5.9 years ago by ▴ 20
0
votes
3
replies
1.1k
views
Analyzing a subgroups of samples, which result should I trust
deseq2 rna-seq
written 6.2 years ago by ▴ 20
0
votes
0
replies
699
views
Comment: C: Re-calculate DESeq from dds based on another design
6.4 years ago Raymond ▴ 20
0
votes
2
replies
699
views
Re-calculate DESeq from dds based on another design
deseq2
updated 6.4 years ago by 42k • written 6.4 years ago by ▴ 20
1
vote
5
replies
1.8k
views
To analyze the overall variance, which one to choose, vst or DESeq2 normalized counts?
deseq2
updated 6.4 years ago by ▴ 20 • written 6.4 years ago by ▴ 20
0
votes
0
replies
1.8k
views
Comment: C: To analyze the overall variance, which one to choose, vst or DESeq2 normalized c
6.4 years ago Raymond ▴ 20
0
votes
0
replies
2.2k
views
Comment: C: How to get the latest KEGG pathway
6.4 years ago Raymond ▴ 20
1
vote
2
replies
2.2k
views
How to get the latest KEGG pathway
KEGG kegg.db kegggraph
6.4 years ago Raymond ▴ 20
1
vote
1
reply
1.2k
views
Comment: C: what the first row without a gene name?
6.4 years ago Raymond ▴ 20
4
votes
4
replies
1.2k
views
what the first row without a gene name?
deseq2
updated 3.4 years ago by 66k • written 6.4 years ago by ▴ 20
0
votes
0
replies
5.9k
views
Comment: C: Remove one sample from DESeq2 subject
6.5 years ago Raymond ▴ 20
3
votes
2
replies
5.9k
views
Remove one sample from DESeq2 subject
deseq2
updated 6.5 years ago by 42k • written 6.5 years ago by ▴ 20
0
votes
0
replies
2.4k
views
Comment: C: PCA based on a subset of genes
6.7 years ago Raymond ▴ 20
0
votes
0
replies
2.4k
views
Comment: C: PCA based on a subset of genes
6.7 years ago Raymond ▴ 20
3
votes
7
replies
2.4k
views
PCA based on a subset of genes
deseq2
updated 6.7 years ago by 42k • written 6.7 years ago by ▴ 20
0
votes
1
reply
2.4k
views
Comment: A: PCA based on a subset of genes
6.7 years ago Raymond ▴ 20
0
votes
0
replies
4.5k
views
Comment: C: How to get DESeq2 sizefactors from data imported using tximport
6.7 years ago Raymond ▴ 20
0
votes
1
reply
4.5k
views
Comment: C: How to get DESeq2 sizefactors from data imported using tximport
6.7 years ago Raymond ▴ 20
31 results • Page 1 of 1
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