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Answer: Answer: FPKM t-test vs DEseq2
17 months ago ATpoint ★ 4.4k
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732
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Answer: Answer: Down weighing an outlier in DESeq2 ?
17 months ago ATpoint ★ 4.4k
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645
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Answer: Answer: Performing a one-sided test for differential expression analysis in edgeR
17 months ago ATpoint ★ 4.4k
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Answer: Answer: DESeq2 for single cell pseudobulk processing
17 months ago ATpoint ★ 4.4k
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715
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Comment: Comment: How Can I Assess the Reliability of BCV (Square-Root Dispersion) in Non-Replicat
17 months ago ATpoint ★ 4.4k
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Answer: Answer: Removing Unwanted Variations
17 months ago ATpoint ★ 4.4k
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Comment: Comment: Differential Expression Analysis between Clusters
17 months ago ATpoint ★ 4.4k
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Answer: Answer: ModuleExprScore function/ hdWGNCA
17 months ago ATpoint ★ 4.4k
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2.4k
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Answer: Answer: blockwiseModule crashes in the end and doesn't generate modules
17 months ago ATpoint ★ 4.4k
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2.8k
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Answer: Answer: Normalisation of data using DESeq2 with multi-groups
17 months ago ATpoint ★ 4.4k
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542
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Answer: Answer: DESeq2 design matrix accounting for high heterogeneity of individuals inside a g
17 months ago ATpoint ★ 4.4k
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666
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Answer: Answer: Can I run deseq2 on two separate experiments at once?
17 months ago ATpoint ★ 4.4k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
17 months ago ATpoint ★ 4.4k
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1.7k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
17 months ago ATpoint ★ 4.4k
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1.7k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
17 months ago ATpoint ★ 4.4k
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1.7k
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Answer: Answer: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
17 months ago ATpoint ★ 4.4k
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2.2k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
18 months ago ATpoint ★ 4.4k
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1.9k
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Answer: Answer: RNA-seq analysis without replicates
18 months ago ATpoint ★ 4.4k
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349
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Answer: Answer: DESeq
18 months ago ATpoint ★ 4.4k
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890
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Comment: Comment: BiomaRt: problems annotating a list of DEGs from DESeq2
18 months ago ATpoint ★ 4.4k
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870
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Answer: Answer: How to import dataset from other software into DESeq2?
18 months ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: Error with regionCounts()
18 months ago ATpoint ★ 4.4k
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1.1k
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Answer: Answer: Error with regionCounts()
18 months ago ATpoint ★ 4.4k
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597
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Answer: Answer: How to get around the warning message: mzR has been built against a different Rc
18 months ago ATpoint ★ 4.4k
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1.0k
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Comment: Comment: Scaling and normalization by deconvolution of SMART-Seq 2 data
18 months ago ATpoint ★ 4.4k
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1.9k
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Comment: Comment: how can I do gene differential analysis on data after vst
18 months ago ATpoint ★ 4.4k
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943
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Answer: Answer: ggplot and geom_lines for clustering
18 months ago ATpoint ★ 4.4k
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1.9k
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Comment: Comment: how can I do gene differential analysis on data after vst
18 months ago ATpoint ★ 4.4k
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1
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3.0k
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Comment: Comment: How to combine two DESeq2 objects (dds) for analysis
18 months ago ATpoint ★ 4.4k
1
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1
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1.9k
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Comment: Comment: how can I do gene differential analysis on data after vst
18 months ago ATpoint ★ 4.4k
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1
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1.9k
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Answer: Answer: how can I do gene differential analysis on data after vst
18 months ago ATpoint ★ 4.4k
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1
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1.0k
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Comment: Comment: limma with or without intercept gives different results
18 months ago ATpoint ★ 4.4k
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2.5k
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Comment: Comment: deseq2 normalization and statistical method
18 months ago ATpoint ★ 4.4k
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801
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Answer: Answer: HISAT2 mapping
18 months ago ATpoint ★ 4.4k
1
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951
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Comment: Comment: Multifactorial Design for DESEQ2
18 months ago ATpoint ★ 4.4k
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744
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Comment: Comment: Doubt about expression data as well as assay
18 months ago ATpoint ★ 4.4k
3
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1.1k
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Answer: Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
18 months ago ATpoint ★ 4.4k
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2.5k
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Answer: Answer: deseq2 normalization and statistical method
18 months ago ATpoint ★ 4.4k
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1.2k
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Comment: Comment: Batch correction and Deseq2
18 months ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
18 months ago ATpoint ★ 4.4k
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540
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Answer: Answer: Are polynomial contrasts for a time factor possible in DESeq2?
18 months ago ATpoint ★ 4.4k
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4.4k
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Answer: Answer: How to change the dot size in plotPCA?
18 months ago ATpoint ★ 4.4k
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0
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1.2k
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Answer: Answer: DESeqDataSetFromMatrix NA values
18 months ago ATpoint ★ 4.4k
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1
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955
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Answer: Answer: How to compute(calculate) rlog and vst provided from DESeq2
18 months ago ATpoint ★ 4.4k
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541
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Answer: Answer: Outlier removal outcome
18 months ago ATpoint ★ 4.4k
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1.6k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
18 months ago ATpoint ★ 4.4k
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1.3k
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Answer: Answer: deseq2 RLE normalization
18 months ago ATpoint ★ 4.4k
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747
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Answer: Answer: Using DESeq2 only for normalization
18 months ago ATpoint ★ 4.4k
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1
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1.1k
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Comment: Comment: hill-shaped p-value distributions using EdgeR
18 months ago ATpoint ★ 4.4k
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1.3k
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Comment: Comment: different number of DEG because of outliers
updated 18 months ago by 42k • written 18 months ago by ★ 4.4k
971 results • Page 9 of 20
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