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Comment: Comment: Visualization of negative log CPM values
20 months ago ATpoint ★ 4.6k
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5.6k
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Comment: Comment: Visualization of negative log CPM values
20 months ago ATpoint ★ 4.6k
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1
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851
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Answer: Answer: DoparParam() execution fails when foreach() works
20 months ago ATpoint ★ 4.6k
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1.4k
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Answer: Answer: Nanostring data differential expression analysis: limma or DESeq2?
20 months ago ATpoint ★ 4.6k
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782
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Answer: Answer: how to solve this error
20 months ago ATpoint ★ 4.6k
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1.4k
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Comment: Comment: How to update a package at Bioconductor
20 months ago ATpoint ★ 4.6k
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Comment: Comment: Installing densvis on a Singularity container
20 months ago ATpoint ★ 4.6k
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1.5k
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Answer: Answer: Subsetting DESeq data set to compare treatments within one group (multi-group ex
21 months ago ATpoint ★ 4.6k
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2.5k
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Comment: Comment: optimHess problem in apeglm/DESeq2
21 months ago ATpoint ★ 4.6k
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875
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Answer: Answer: Docker usage with Trio Bioconductor Package
21 months ago ATpoint ★ 4.6k
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633
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Answer: Answer: How to determine if any samples are outliers in PCA? What is the criteria?
21 months ago ATpoint ★ 4.6k
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2.5k
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Comment: Comment: optimHess problem in apeglm/DESeq2
21 months ago ATpoint ★ 4.6k
2
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7
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2.5k
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optimHess problem in apeglm/DESeq2
DESeq2 apeglm
updated 21 months ago by 43k • written 21 months ago by ★ 4.6k
3
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1.0k
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Answer: Answer: 'Seurat' package
21 months ago ATpoint ★ 4.6k
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639
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Answer: Answer: DESeq2: Comparison between 1 test sample with 1 control sample
21 months ago ATpoint ★ 4.6k
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2.6k
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Comment: Comment: lfcshrink error DESeq2
21 months ago ATpoint ★ 4.6k
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1
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711
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Answer: Answer: Deseq2 design
21 months ago ATpoint ★ 4.6k
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2.6k
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Comment: Comment: lfcshrink error DESeq2
21 months ago ATpoint ★ 4.6k
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1.5k
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Comment: Comment: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
21 months ago ATpoint ★ 4.6k
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1
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1.5k
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Answer: Answer: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
21 months ago ATpoint ★ 4.6k
1
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0
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792
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Comment: Comment: load failed for ‘DESeq2’
21 months ago ATpoint ★ 4.6k
0
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0
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723
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Comment: Comment: WGCNA for one perturbation time series (pooled from two independent replicates)?
21 months ago ATpoint ★ 4.6k
1
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1
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1.6k
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Answer: Answer: failed to use tximport for creating count matrix from kallisto
21 months ago ATpoint ★ 4.6k
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1
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1.9k
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Answer: Answer: model matrix not full rank
21 months ago ATpoint ★ 4.6k
0
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0
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656
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Comment: Comment: ANOVA-like testing for bulkRNAseq with three conditions with Wald test
21 months ago ATpoint ★ 4.6k
1
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1
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714
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Answer: Answer: Different regions for normalisation
21 months ago ATpoint ★ 4.6k
1
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714
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Comment: Comment: RNA seq with edgeR with several factors
21 months ago ATpoint ★ 4.6k
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657
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Answer: Answer: Performing pair-wise comparisons for smaller p value analyzing time series data
21 months ago ATpoint ★ 4.6k
1
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14k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
21 months ago ATpoint ★ 4.6k
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1.4k
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Comment: Comment: Combine RNA-seq
21 months ago ATpoint ★ 4.6k
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1
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1.4k
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Answer: Answer: Combine RNA-seq
21 months ago ATpoint ★ 4.6k
1
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759
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Answer: Answer: RNA-seq data collected at differnt time points
21 months ago ATpoint ★ 4.6k
0
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0
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4.9k
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Answer: Answer: package ‘Bioconductor’ is not available for Bioconductor version '3.16'
21 months ago ATpoint ★ 4.6k
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1
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1.3k
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Answer: Answer: tximport error
21 months ago ATpoint ★ 4.6k
0
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0
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855
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Comment: Comment: WGCNA problem
21 months ago ATpoint ★ 4.6k
0
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0
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1.2k
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Comment: Comment: fc value in ggmaplot does not correspond to the real lfc value on the plot
22 months ago ATpoint ★ 4.6k
1
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1
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1.2k
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Answer: Answer: fc value in ggmaplot does not correspond to the real lfc value on the plot
22 months ago ATpoint ★ 4.6k
1
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0
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1.3k
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Comment: Comment: calculate distance to a certain sequence in one gene
22 months ago ATpoint ★ 4.6k
0
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0
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478
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Comment: Comment: Package requires binary executable from external software?
22 months ago ATpoint ★ 4.6k
0
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1
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1.1k
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Comment: Comment: Tximeta error in analysis of downloaded data
22 months ago ATpoint ★ 4.6k
1
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1
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1.8k
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Answer: Answer: Speedglm dependency issue?
22 months ago ATpoint ★ 4.6k
1
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1
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2.1k
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Comment: Comment: How to get TPM / FPKM after batch correction with DESeq2?
22 months ago ATpoint ★ 4.6k
0
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0
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638
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Comment: Comment: Sample expression calculation in rna seq
22 months ago ATpoint ★ 4.6k
1
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1
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2.1k
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Answer: Answer: How to get TPM / FPKM after batch correction with DESeq2?
22 months ago ATpoint ★ 4.6k
2
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1
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1.4k
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Answer: Answer: Error in checkFullRank(modelMatrix)
22 months ago ATpoint ★ 4.6k
0
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0
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829
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Comment: Comment: Down weighing an outlier in DESeq2 ?
22 months ago ATpoint ★ 4.6k
1
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2.5k
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Answer: Answer: FPKM t-test vs DEseq2
22 months ago ATpoint ★ 4.6k
0
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1
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829
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Answer: Answer: Down weighing an outlier in DESeq2 ?
22 months ago ATpoint ★ 4.6k
1
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0
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715
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Answer: Answer: Performing a one-sided test for differential expression analysis in edgeR
22 months ago ATpoint ★ 4.6k
1
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2
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3.9k
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Answer: Answer: DESeq2 for single cell pseudobulk processing
22 months ago ATpoint ★ 4.6k
1,017 results • Page 9 of 21
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