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Comment: Comment: Why select top highly expressed genes based on normalized counts, but then plot
4 days ago ATpoint ★ 4.6k
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873
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Answer: Answer: Why select top highly expressed genes based on normalized counts, but then plot
5 days ago ATpoint ★ 4.6k
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211
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Comment: Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
5 days ago ATpoint ★ 4.6k
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131
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Answer: Answer: WGCNA sample-data preprocessing order
8 days ago ATpoint ★ 4.6k
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129
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Answer: Answer: WGCNA: Can we use high power (26) for signed network?
8 days ago ATpoint ★ 4.6k
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94
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Answer: Answer: Ph.D. scholar
8 days ago ATpoint ★ 4.6k
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362
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Comment: Comment: EdgeR Biological CVs
11 days ago ATpoint ★ 4.6k
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384
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Answer: Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
12 days ago ATpoint ★ 4.6k
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578
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
22 days ago ATpoint ★ 4.6k
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146
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Comment: Comment: Installation error for Rsamtools.
22 days ago ATpoint ★ 4.6k
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578
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
22 days ago ATpoint ★ 4.6k
1
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2
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578
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
22 days ago ATpoint ★ 4.6k
0
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376
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Answer: Answer: DESeq2 analysis with transcript counts
23 days ago ATpoint ★ 4.6k
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792
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Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
23 days ago ATpoint ★ 4.6k
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290
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Answer: Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
4 weeks ago ATpoint ★ 4.6k
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329
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Answer: Answer: Standardization of rlog transformed counts before PCA
6 weeks ago ATpoint ★ 4.6k
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828
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
7 weeks ago ATpoint ★ 4.6k
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828
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
7 weeks ago ATpoint ★ 4.6k
0
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1
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828
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
7 weeks ago ATpoint ★ 4.6k
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0
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2.6k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
7 weeks ago ATpoint ★ 4.6k
2
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755
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Answer: Answer: RSubread output significantly different from bash Subread output
8 weeks ago • updated 7 weeks ago ATpoint ★ 4.6k
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2.6k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago ATpoint ★ 4.6k
1
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1
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2.6k
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Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago ATpoint ★ 4.6k
0
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217
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Comment: Comment: WGCNA with TPM tables
10 weeks ago ATpoint ★ 4.6k
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178
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Comment: Comment: eRNAs count
10 weeks ago ATpoint ★ 4.6k
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291
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Comment: Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
10 weeks ago ATpoint ★ 4.6k
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421
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Answer: Answer: DESeq2 rerun returns different results
11 weeks ago ATpoint ★ 4.6k
1
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0
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655
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Answer: Answer: Handling biological replicates in DESeq2
11 weeks ago ATpoint ★ 4.6k
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1.0k
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Answer: Answer: Volcano plot has many values around zero
12 weeks ago ATpoint ★ 4.6k
2
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1
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715
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Comment: Comment: DESeq Input from Salmon + tximport/tximeta
12 weeks ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
3 months ago ATpoint ★ 4.6k
0
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433
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Answer: Answer: Average expression of genes across replicates
3 months ago ATpoint ★ 4.6k
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434
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Answer: Answer: Spike-in normalization method in ATACseq
3 months ago ATpoint ★ 4.6k
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812
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Comment: Comment: New to Deseq2 - DEG questions / MA plot
3 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: Analysis of large RNA-Seq Datasets
3 months ago ATpoint ★ 4.6k
0
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258
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Answer: Answer: how to extract expression matrix post deseq2
3 months ago ATpoint ★ 4.6k
1
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0
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413
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Answer: Answer: Automatically generate contrasts from a model matrix / formula
3 months ago ATpoint ★ 4.6k
1
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0
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614
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Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
3 months ago ATpoint ★ 4.6k
0
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1
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248
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Answer: Answer: Using Normalized Counts in DESeq2
3 months ago ATpoint ★ 4.6k
0
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1
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605
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Comment: Comment: What should be the normalization protocol for RNA seq data for WGCNA?
3 months ago ATpoint ★ 4.6k
1
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1
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605
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Answer: Answer: What should be the normalization protocol for RNA seq data for WGCNA?
3 months ago ATpoint ★ 4.6k
0
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0
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540
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Comment: Comment: How to control batch effect if Group and batch are same?
3 months ago ATpoint ★ 4.6k
0
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0
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614
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Comment: Comment: Mostly increased counts in differentially accessible peaks using DESeq2
3 months ago ATpoint ★ 4.6k
5
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540
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Answer: Answer: How to control batch effect if Group and batch are same?
4 months ago ATpoint ★ 4.6k
1
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0
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287
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Comment: Comment: Normalization RNA-seq for multiple plates
4 months ago ATpoint ★ 4.6k
1
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0
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377
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Answer: Answer: DEseq 2 LFC shrinkage with apeglm in single-cell pseudobulk: strange volcano plo
4 months ago ATpoint ★ 4.6k
0
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1
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812
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Answer: Answer: New to Deseq2 - DEG questions / MA plot
4 months ago ATpoint ★ 4.6k
1
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1
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891
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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
5 months ago ATpoint ★ 4.6k
1
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1
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891
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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
5 months ago ATpoint ★ 4.6k
0
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1
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374
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Answer: Answer: Questions in Regards to LFC shrinkage in DSeq2
5 months ago ATpoint ★ 4.6k
1,016 results • Page 1 of 21
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