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960
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Answer: Answer: Remove duplicate genera in DEseq output?
16 months ago ATpoint ★ 4.4k
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895
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Comment: Comment: Recount3: PCR duplicates
16 months ago ATpoint ★ 4.4k
1
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1
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738
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Answer: Answer: Normalized counts from LRT or Wald test?
16 months ago ATpoint ★ 4.4k
2
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701
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Answer: Answer: DESeq2 or edgeR for Presence and Absence of Proteins
16 months ago ATpoint ★ 4.4k
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0
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4.4k
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Comment: Comment: Visualization of negative log CPM values
16 months ago ATpoint ★ 4.4k
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1
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4.4k
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Comment: Comment: Visualization of negative log CPM values
16 months ago ATpoint ★ 4.4k
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1
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694
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Answer: Answer: DoparParam() execution fails when foreach() works
16 months ago ATpoint ★ 4.4k
0
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1
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1.1k
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Answer: Answer: Nanostring data differential expression analysis: limma or DESeq2?
16 months ago ATpoint ★ 4.4k
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676
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Answer: Answer: how to solve this error
16 months ago ATpoint ★ 4.4k
0
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1
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1.2k
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Comment: Comment: How to update a package at Bioconductor
16 months ago ATpoint ★ 4.4k
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0
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2.1k
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Comment: Comment: Installing densvis on a Singularity container
16 months ago ATpoint ★ 4.4k
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1
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1.2k
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Answer: Answer: Subsetting DESeq data set to compare treatments within one group (multi-group ex
16 months ago ATpoint ★ 4.4k
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1
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2.2k
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Comment: Comment: optimHess problem in apeglm/DESeq2
16 months ago ATpoint ★ 4.4k
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0
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754
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Answer: Answer: Docker usage with Trio Bioconductor Package
16 months ago ATpoint ★ 4.4k
1
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0
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522
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Answer: Answer: How to determine if any samples are outliers in PCA? What is the criteria?
16 months ago ATpoint ★ 4.4k
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1
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2.2k
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Comment: Comment: optimHess problem in apeglm/DESeq2
16 months ago ATpoint ★ 4.4k
2
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7
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2.2k
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optimHess problem in apeglm/DESeq2
DESeq2 apeglm
updated 16 months ago by 42k • written 16 months ago by ★ 4.4k
3
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947
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Answer: Answer: 'Seurat' package
16 months ago ATpoint ★ 4.4k
0
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0
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531
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Answer: Answer: DESeq2: Comparison between 1 test sample with 1 control sample
16 months ago ATpoint ★ 4.4k
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1
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2.2k
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Comment: Comment: lfcshrink error DESeq2
16 months ago ATpoint ★ 4.4k
0
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1
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630
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Answer: Answer: Deseq2 design
16 months ago ATpoint ★ 4.4k
0
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1
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2.2k
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Comment: Comment: lfcshrink error DESeq2
16 months ago ATpoint ★ 4.4k
0
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0
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1.3k
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Comment: Comment: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
17 months ago ATpoint ★ 4.4k
1
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1
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1.3k
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Answer: Answer: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
17 months ago ATpoint ★ 4.4k
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0
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696
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Comment: Comment: load failed for ‘DESeq2’
17 months ago ATpoint ★ 4.4k
0
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0
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631
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Comment: Comment: WGCNA for one perturbation time series (pooled from two independent replicates)?
17 months ago ATpoint ★ 4.4k
1
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1
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1.4k
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Answer: Answer: failed to use tximport for creating count matrix from kallisto
17 months ago ATpoint ★ 4.4k
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1
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1.5k
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Answer: Answer: model matrix not full rank
17 months ago ATpoint ★ 4.4k
0
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0
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582
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Comment: Comment: ANOVA-like testing for bulkRNAseq with three conditions with Wald test
17 months ago ATpoint ★ 4.4k
1
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1
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619
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Answer: Answer: Different regions for normalisation
17 months ago ATpoint ★ 4.4k
1
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0
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641
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Comment: Comment: RNA seq with edgeR with several factors
17 months ago ATpoint ★ 4.4k
0
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0
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574
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Answer: Answer: Performing pair-wise comparisons for smaller p value analyzing time series data
17 months ago ATpoint ★ 4.4k
1
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0
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13k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
17 months ago ATpoint ★ 4.4k
0
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0
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1.2k
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Comment: Comment: Combine RNA-seq
17 months ago ATpoint ★ 4.4k
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1
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1.2k
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Answer: Answer: Combine RNA-seq
17 months ago ATpoint ★ 4.4k
1
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0
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592
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Answer: Answer: RNA-seq data collected at differnt time points
17 months ago ATpoint ★ 4.4k
0
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0
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4.2k
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Answer: Answer: package ‘Bioconductor’ is not available for Bioconductor version '3.16'
17 months ago ATpoint ★ 4.4k
0
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1
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1.1k
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Answer: Answer: tximport error
17 months ago ATpoint ★ 4.4k
0
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0
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755
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Comment: Comment: WGCNA problem
17 months ago ATpoint ★ 4.4k
0
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0
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983
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Comment: Comment: fc value in ggmaplot does not correspond to the real lfc value on the plot
17 months ago ATpoint ★ 4.4k
1
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1
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983
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Answer: Answer: fc value in ggmaplot does not correspond to the real lfc value on the plot
17 months ago ATpoint ★ 4.4k
1
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0
replies
1.1k
views
Comment: Comment: calculate distance to a certain sequence in one gene
17 months ago ATpoint ★ 4.4k
0
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0
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414
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Comment: Comment: Package requires binary executable from external software?
17 months ago ATpoint ★ 4.4k
0
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1
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986
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Comment: Comment: Tximeta error in analysis of downloaded data
17 months ago ATpoint ★ 4.4k
1
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1
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1.6k
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Answer: Answer: Speedglm dependency issue?
17 months ago ATpoint ★ 4.4k
1
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1
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1.8k
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Comment: Comment: How to get TPM / FPKM after batch correction with DESeq2?
17 months ago ATpoint ★ 4.4k
0
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0
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568
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Comment: Comment: Sample expression calculation in rna seq
17 months ago ATpoint ★ 4.4k
1
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1
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1.8k
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Answer: Answer: How to get TPM / FPKM after batch correction with DESeq2?
17 months ago ATpoint ★ 4.4k
2
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1
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1.2k
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Answer: Answer: Error in checkFullRank(modelMatrix)
17 months ago ATpoint ★ 4.4k
0
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0
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731
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Comment: Comment: Down weighing an outlier in DESeq2 ?
17 months ago ATpoint ★ 4.4k
971 results • Page 8 of 20
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