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2
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Answer: Answer: DESeq2: Design model includes sex but only one female
18 months ago ATpoint ★ 4.8k
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Comment: Comment: limma: More differentially expressed genes when factor included in model than wh
18 months ago ATpoint ★ 4.8k
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Answer: Answer: scRNA analysis : DEG between low and high-expressing cells
18 months ago ATpoint ★ 4.8k
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851
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Comment: Comment: Extract LRT results for each comparison
18 months ago ATpoint ★ 4.8k
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Answer: Answer: Biostrings error at retrieving protein sequences
18 months ago ATpoint ★ 4.8k
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851
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Answer: Answer: Extract LRT results for each comparison
18 months ago ATpoint ★ 4.8k
4
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Answer: Answer: ComBat_seq function in sva package does not return a matrix
19 months ago ATpoint ★ 4.8k
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667
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
19 months ago ATpoint ★ 4.8k
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727
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Answer: Answer: Batch effect adjust in model matrix
19 months ago ATpoint ★ 4.8k
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1.8k
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Comment: Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
19 months ago ATpoint ★ 4.8k
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2
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1.1k
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Comment: Comment: DataFrame Construction With Non-standard Column
19 months ago ATpoint ★ 4.8k
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944
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Answer: Answer: DeSeq2 design fails (full model matrix is less than full rank)
19 months ago ATpoint ★ 4.8k
0
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600
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Answer: Answer: Adding chromosome numbers to the respective gene ids of DESeq2 output file
19 months ago ATpoint ★ 4.8k
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1.1k
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Comment: Comment: DataFrame Construction With Non-standard Column
19 months ago ATpoint ★ 4.8k
0
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634
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Comment: Comment: TxDb.Dmelanogaster.UCSC.dm3.ensGene
19 months ago ATpoint ★ 4.8k
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Answer: Answer: Differential expression analysis with only FPKM matrix available from total newb
19 months ago ATpoint ★ 4.8k
0
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794
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
19 months ago ATpoint ★ 4.8k
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2.0k
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Answer: Answer: Software Compatibility Issue Between phyloseq and lme4 Packages
19 months ago ATpoint ★ 4.8k
0
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6
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49k
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Answer: Answer: SingleR Label.Ont
19 months ago ATpoint ★ 4.8k
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4.3k
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Answer: Answer: TPM from STAR mapped counts
19 months ago ATpoint ★ 4.8k
0
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558
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Answer: Answer: Missing genes in the differentially expressed gene list which otherwise are expe
19 months ago ATpoint ★ 4.8k
1
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1.8k
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Comment: Comment: Getting batch corrected counts after RUVSeq
19 months ago ATpoint ★ 4.8k
1
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0
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926
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
19 months ago ATpoint ★ 4.8k
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1.8k
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Comment: Comment: Getting batch corrected counts after RUVSeq
19 months ago ATpoint ★ 4.8k
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1.8k
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Answer: Answer: Getting batch corrected counts after RUVSeq
19 months ago ATpoint ★ 4.8k
0
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502
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
19 months ago ATpoint ★ 4.8k
1
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823
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Answer: Answer: bulk RNA-Seq batch correction
19 months ago ATpoint ★ 4.8k
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1.0k
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Comment: Comment: AAbin vs DNAbin structures
19 months ago ATpoint ★ 4.8k
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1
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2.0k
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Answer: Answer: MACS2 not installing
19 months ago ATpoint ★ 4.8k
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1
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1.1k
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
20 months ago ATpoint ★ 4.8k
0
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0
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1.8k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
20 months ago ATpoint ★ 4.8k
0
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0
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743
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
20 months ago ATpoint ★ 4.8k
1
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2.8k
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Comment: Comment: PCA percent variance DESeq2
20 months ago ATpoint ★ 4.8k
1
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3.5k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
20 months ago ATpoint ★ 4.8k
0
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890
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Answer: Answer: Speeding up large scale scRNAseq analyses in R and improve memory
20 months ago ATpoint ★ 4.8k
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3.7k
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Comment: Comment: Protein differential Expression analysis
20 months ago ATpoint ★ 4.8k
0
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699
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Answer: Answer: TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
20 months ago ATpoint ★ 4.8k
0
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727
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Answer: Answer: Package "Netboost" is an Unix-only package, how can I install it in R?
20 months ago ATpoint ★ 4.8k
0
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0
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939
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Answer: Answer: Getting NAs in both p-values (normal and adjusted) in DEseq2
20 months ago ATpoint ★ 4.8k
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1
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2.8k
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Comment: Comment: PCA percent variance DESeq2
20 months ago ATpoint ★ 4.8k
0
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2.8k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
20 months ago ATpoint ★ 4.8k
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2.8k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
20 months ago ATpoint ★ 4.8k
1
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2
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2.8k
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Answer: Answer: PCA percent variance DESeq2
20 months ago ATpoint ★ 4.8k
1
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1
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2.8k
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Answer: Answer: Time-series RNA-seq analysis using DESeq2
20 months ago ATpoint ★ 4.8k
0
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1
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3.1k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
20 months ago ATpoint ★ 4.8k
0
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0
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869
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Answer: Answer: Why was the number of DEG different between DESeq results and count by myself us
20 months ago ATpoint ★ 4.8k
1
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1
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3.1k
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Answer: Answer: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
20 months ago ATpoint ★ 4.8k
1
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0
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3.1k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
20 months ago ATpoint ★ 4.8k
0
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1
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1.1k
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
20 months ago ATpoint ★ 4.8k
0
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0
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1.2k
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Answer: Answer: unable to retrieve certain packages from bioconductor 3.15
20 months ago ATpoint ★ 4.8k
1,056 results • Page 7 of 22
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