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Comment: Comment: Time-series RNA-seq analysis using DESeq2
18 months ago ATpoint ★ 4.6k
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Answer: Answer: PCA percent variance DESeq2
18 months ago • updated 17 months ago ATpoint ★ 4.6k
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Answer: Answer: Time-series RNA-seq analysis using DESeq2
18 months ago ATpoint ★ 4.6k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
18 months ago ATpoint ★ 4.6k
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Answer: Answer: Why was the number of DEG different between DESeq results and count by myself us
18 months ago ATpoint ★ 4.6k
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Answer: Answer: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
18 months ago ATpoint ★ 4.6k
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2.5k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
18 months ago ATpoint ★ 4.6k
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
18 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: unable to retrieve certain packages from bioconductor 3.15
18 months ago ATpoint ★ 4.6k
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2.6k
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Comment: Comment: can't open mghp.osn.xsede.org
18 months ago ATpoint ★ 4.6k
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627
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Answer: Answer: FALSE error when checking a pre made sample data
18 months ago ATpoint ★ 4.6k
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Comment: Comment: bulk RNA-seq analysis using R : batch effect : One question concerning Combat-se
18 months ago ATpoint ★ 4.6k
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Answer: Answer: Recommendation for large.n in filterByExpr
18 months ago ATpoint ★ 4.6k
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Answer: Answer: DESeq2 error after installing BiocManager
18 months ago ATpoint ★ 4.6k
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1.4k
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Comment: Comment: lfcShrink() and batch effects in DESeq2
18 months ago ATpoint ★ 4.6k
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Answer: Answer: lfcShrink() and batch effects in DESeq2
18 months ago ATpoint ★ 4.6k
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747
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Answer: Answer: Zero counts for all samples for all genes downloaded from recount3
18 months ago ATpoint ★ 4.6k
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881
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Answer: Answer: Inquiring about Comparative Analysis without Replicates in NOIseq R Package
18 months ago ATpoint ★ 4.6k
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2.9k
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Comment: Comment: Difference between DESeqDataSetFromMatrix() function and DESeq() function
18 months ago ATpoint ★ 4.6k
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675
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Answer: Answer: DESeq2: full model matrix is less than full rank
18 months ago ATpoint ★ 4.6k
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2.9k
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Answer: Answer: Difference between DESeqDataSetFromMatrix() function and DESeq() function
18 months ago ATpoint ★ 4.6k
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2.2k
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Answer: Answer: DESeq2 discrepancy in log2FC significance and normalized counts significance
18 months ago ATpoint ★ 4.6k
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Comment: Comment: insufficient unique points for computing knee/inflection points
18 months ago ATpoint ★ 4.6k
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684
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Answer: Answer: If highly-expressed genes are upregulated, what happens to genes with lower expr
18 months ago ATpoint ★ 4.6k
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1.1k
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Comment: Comment: insufficient unique points for computing knee/inflection points
18 months ago ATpoint ★ 4.6k
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1.2k
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
18 months ago ATpoint ★ 4.6k
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963
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Comment: Comment: DESeq differential expression results are too stringet. How to relax my criteria
18 months ago ATpoint ★ 4.6k
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963
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Answer: Answer: DESeq differential expression results are too stringet. How to relax my criteria
18 months ago ATpoint ★ 4.6k
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1
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1.6k
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Answer: Answer: Same few genes repeated in DESeq2 Results
18 months ago ATpoint ★ 4.6k
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1.6k
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Comment: Comment: Same few genes repeated in DESeq2 Results
18 months ago ATpoint ★ 4.6k
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1.6k
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Comment: Comment: Same few genes repeated in DESeq2 Results
18 months ago ATpoint ★ 4.6k
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2
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1.1k
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Comment: Comment: DESeq2 analysis
18 months ago ATpoint ★ 4.6k
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1
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4.0k
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Answer: Answer: vmatchPattern on DNAstring set
18 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: DESeq2 analysis
18 months ago ATpoint ★ 4.6k
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3.7k
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Answer: Answer: Warning messages in detecting P-values
18 months ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
18 months ago ATpoint ★ 4.6k
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2.6k
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Comment: Comment: RNA seq differential expression analysis for large sample size
18 months ago ATpoint ★ 4.6k
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6.8k
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Comment: Comment: diffbind
18 months ago ATpoint ★ 4.6k
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2.6k
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Answer: Answer: RNA seq differential expression analysis for large sample size
18 months ago ATpoint ★ 4.6k
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848
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Answer: Answer: Affymetrix hgu133plus2.db: How to best derive an expression value for genes that
18 months ago ATpoint ★ 4.6k
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1
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648
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Answer: Answer: Building Multifactor Model in DESeq2
18 months ago ATpoint ★ 4.6k
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806
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Answer: Answer: Read methylation data from tar files on GEO (GSE73303)
18 months ago ATpoint ★ 4.6k
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2
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2.2k
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Answer: Answer: Unable to install DESeq2
18 months ago ATpoint ★ 4.6k
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1
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991
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Answer: Answer: Correct DESeq2 design for tumoral stage differences in tumoral and matched-norma
18 months ago ATpoint ★ 4.6k
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0
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762
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Comment: Comment: I changed the reference in DGE contrasts by DESeq2, but the results changed just
18 months ago ATpoint ★ 4.6k
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653
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Answer: Answer: For limma, if I leave coef=NULL, which test is the P value for?
19 months ago ATpoint ★ 4.6k
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1.8k
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Comment: Comment: Reading data into chromVAR
19 months ago ATpoint ★ 4.6k
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829
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Comment: Comment: Pairwise comparison for DEG analysis
19 months ago ATpoint ★ 4.6k
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694
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Answer: Answer: DGE analysis for diseased samples through DESeq2 and Ballgown
19 months ago ATpoint ★ 4.6k
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993
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Comment: Comment: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
19 months ago ATpoint ★ 4.6k
1,017 results • Page 7 of 21
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