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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
15 months ago ATpoint ★ 4.6k
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757
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Comment: Comment: can't update bioconductor 3.18
15 months ago ATpoint ★ 4.6k
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1
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1.8k
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Answer: Answer: DESeq2 Normalization with 4 Groups
15 months ago ATpoint ★ 4.6k
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1.4k
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Comment: Comment: [Bug] Segfault in edgeR::cpm
15 months ago ATpoint ★ 4.6k
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1.6k
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Answer: Answer: choosing rank for GSEA
15 months ago ATpoint ★ 4.6k
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842
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Comment: Comment: Duplicated expression values?
15 months ago ATpoint ★ 4.6k
0
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1.2k
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Answer: Answer: Using dplyr commands with DataFrame objects
16 months ago ATpoint ★ 4.6k
0
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1
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843
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Answer: Answer: Differential Expression Cutoffs for n = 1
16 months ago ATpoint ★ 4.6k
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705
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Comment: Comment: edgeR: Time course RNA-seq experiments
16 months ago ATpoint ★ 4.6k
2
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2
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1.4k
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Answer: Answer: DESeq2: Design model includes sex but only one female
16 months ago ATpoint ★ 4.6k
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0
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988
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Comment: Comment: limma: More differentially expressed genes when factor included in model than wh
16 months ago ATpoint ★ 4.6k
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972
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Answer: Answer: scRNA analysis : DEG between low and high-expressing cells
16 months ago ATpoint ★ 4.6k
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721
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Comment: Comment: Extract LRT results for each comparison
16 months ago ATpoint ★ 4.6k
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2
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1.2k
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Answer: Answer: Biostrings error at retrieving protein sequences
16 months ago ATpoint ★ 4.6k
0
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1
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721
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Answer: Answer: Extract LRT results for each comparison
16 months ago ATpoint ★ 4.6k
4
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1.9k
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Answer: Answer: ComBat_seq function in sva package does not return a matrix
16 months ago ATpoint ★ 4.6k
0
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1
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586
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
16 months ago ATpoint ★ 4.6k
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690
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Answer: Answer: Batch effect adjust in model matrix
16 months ago ATpoint ★ 4.6k
0
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1.5k
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Comment: Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
16 months ago ATpoint ★ 4.6k
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2
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1.0k
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Comment: Comment: DataFrame Construction With Non-standard Column
16 months ago ATpoint ★ 4.6k
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1
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845
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Answer: Answer: DeSeq2 design fails (full model matrix is less than full rank)
16 months ago ATpoint ★ 4.6k
0
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0
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557
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Answer: Answer: Adding chromosome numbers to the respective gene ids of DESeq2 output file
16 months ago ATpoint ★ 4.6k
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1
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1.0k
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Comment: Comment: DataFrame Construction With Non-standard Column
16 months ago ATpoint ★ 4.6k
0
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592
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Comment: Comment: TxDb.Dmelanogaster.UCSC.dm3.ensGene
16 months ago ATpoint ★ 4.6k
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2
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2.7k
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Answer: Answer: Differential expression analysis with only FPKM matrix available from total newb
16 months ago ATpoint ★ 4.6k
0
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0
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712
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
16 months ago ATpoint ★ 4.6k
1
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0
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1.8k
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Answer: Answer: Software Compatibility Issue Between phyloseq and lme4 Packages
16 months ago ATpoint ★ 4.6k
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6
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47k
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Answer: Answer: SingleR Label.Ont
17 months ago ATpoint ★ 4.6k
1
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0
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3.7k
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Answer: Answer: TPM from STAR mapped counts
17 months ago ATpoint ★ 4.6k
0
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0
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512
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Answer: Answer: Missing genes in the differentially expressed gene list which otherwise are expe
17 months ago ATpoint ★ 4.6k
1
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0
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1.6k
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Comment: Comment: Getting batch corrected counts after RUVSeq
17 months ago ATpoint ★ 4.6k
1
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0
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820
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
17 months ago ATpoint ★ 4.6k
1
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1
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1.6k
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Comment: Comment: Getting batch corrected counts after RUVSeq
17 months ago ATpoint ★ 4.6k
1
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1
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1.6k
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Answer: Answer: Getting batch corrected counts after RUVSeq
17 months ago ATpoint ★ 4.6k
0
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0
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467
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
17 months ago ATpoint ★ 4.6k
1
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0
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778
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Answer: Answer: bulk RNA-Seq batch correction
17 months ago ATpoint ★ 4.6k
0
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1
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935
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Comment: Comment: AAbin vs DNAbin structures
17 months ago ATpoint ★ 4.6k
0
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1
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1.8k
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Answer: Answer: MACS2 not installing
17 months ago ATpoint ★ 4.6k
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1
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1.0k
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
17 months ago ATpoint ★ 4.6k
0
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1.7k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
17 months ago ATpoint ★ 4.6k
0
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0
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702
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
17 months ago ATpoint ★ 4.6k
1
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0
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2.5k
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Comment: Comment: PCA percent variance DESeq2
17 months ago ATpoint ★ 4.6k
1
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1
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2.9k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
17 months ago ATpoint ★ 4.6k
0
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0
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771
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Answer: Answer: Speeding up large scale scRNAseq analyses in R and improve memory
17 months ago ATpoint ★ 4.6k
0
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0
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3.6k
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Comment: Comment: Protein differential Expression analysis
17 months ago ATpoint ★ 4.6k
0
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0
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631
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Answer: Answer: TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
17 months ago ATpoint ★ 4.6k
0
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0
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683
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Answer: Answer: Package "Netboost" is an Unix-only package, how can I install it in R?
17 months ago ATpoint ★ 4.6k
0
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0
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774
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Answer: Answer: Getting NAs in both p-values (normal and adjusted) in DEseq2
17 months ago ATpoint ★ 4.6k
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2.5k
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Comment: Comment: PCA percent variance DESeq2
18 months ago ATpoint ★ 4.6k
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0
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2.3k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
18 months ago ATpoint ★ 4.6k
1,017 results • Page 6 of 21
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