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Answer: Answer: Package "Netboost" is an Unix-only package, how can I install it in R?
13 months ago ATpoint ★ 4.4k
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Answer: Answer: Getting NAs in both p-values (normal and adjusted) in DEseq2
13 months ago ATpoint ★ 4.4k
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Comment: Comment: PCA percent variance DESeq2
13 months ago ATpoint ★ 4.4k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
13 months ago ATpoint ★ 4.4k
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Comment: Comment: Time-series RNA-seq analysis using DESeq2
13 months ago ATpoint ★ 4.4k
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Answer: Answer: PCA percent variance DESeq2
13 months ago ATpoint ★ 4.4k
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Answer: Answer: Time-series RNA-seq analysis using DESeq2
13 months ago ATpoint ★ 4.4k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
13 months ago ATpoint ★ 4.4k
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Answer: Answer: Why was the number of DEG different between DESeq results and count by myself us
13 months ago ATpoint ★ 4.4k
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Answer: Answer: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
13 months ago ATpoint ★ 4.4k
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Comment: Comment: DittoDimPlot errror: Cannot find 'NA' in this Seurat object
13 months ago ATpoint ★ 4.4k
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959
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Comment: Comment: running Bioconductor Docker images only works with versions <= 3.15
13 months ago ATpoint ★ 4.4k
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926
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Answer: Answer: unable to retrieve certain packages from bioconductor 3.15
13 months ago ATpoint ★ 4.4k
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Comment: Comment: can't open mghp.osn.xsede.org
13 months ago ATpoint ★ 4.4k
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Answer: Answer: FALSE error when checking a pre made sample data
13 months ago ATpoint ★ 4.4k
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Comment: Comment: bulk RNA-seq analysis using R : batch effect : One question concerning Combat-se
13 months ago ATpoint ★ 4.4k
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Answer: Answer: Recommendation for large.n in filterByExpr
13 months ago ATpoint ★ 4.4k
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Answer: Answer: DESeq2 error after installing BiocManager
13 months ago ATpoint ★ 4.4k
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Comment: Comment: lfcShrink() and batch effects in DESeq2
13 months ago ATpoint ★ 4.4k
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Answer: Answer: lfcShrink() and batch effects in DESeq2
13 months ago ATpoint ★ 4.4k
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634
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Answer: Answer: Zero counts for all samples for all genes downloaded from recount3
13 months ago ATpoint ★ 4.4k
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732
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Answer: Answer: Inquiring about Comparative Analysis without Replicates in NOIseq R Package
13 months ago ATpoint ★ 4.4k
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Comment: Comment: Difference between DESeqDataSetFromMatrix() function and DESeq() function
14 months ago ATpoint ★ 4.4k
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582
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Answer: Answer: DESeq2: full model matrix is less than full rank
14 months ago ATpoint ★ 4.4k
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Answer: Answer: Difference between DESeqDataSetFromMatrix() function and DESeq() function
14 months ago ATpoint ★ 4.4k
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Answer: Answer: DESeq2 discrepancy in log2FC significance and normalized counts significance
14 months ago ATpoint ★ 4.4k
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951
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Comment: Comment: insufficient unique points for computing knee/inflection points
14 months ago ATpoint ★ 4.4k
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582
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Answer: Answer: If highly-expressed genes are upregulated, what happens to genes with lower expr
14 months ago ATpoint ★ 4.4k
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951
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Comment: Comment: insufficient unique points for computing knee/inflection points
14 months ago ATpoint ★ 4.4k
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
14 months ago ATpoint ★ 4.4k
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827
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Comment: Comment: DESeq differential expression results are too stringet. How to relax my criteria
14 months ago ATpoint ★ 4.4k
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827
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Answer: Answer: DESeq differential expression results are too stringet. How to relax my criteria
14 months ago ATpoint ★ 4.4k
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Answer: Answer: Same few genes repeated in DESeq2 Results
14 months ago ATpoint ★ 4.4k
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Comment: Comment: Same few genes repeated in DESeq2 Results
14 months ago ATpoint ★ 4.4k
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Comment: Comment: Same few genes repeated in DESeq2 Results
14 months ago ATpoint ★ 4.4k
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Comment: Comment: DESeq2 analysis
14 months ago ATpoint ★ 4.4k
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Answer: Answer: vmatchPattern on DNAstring set
14 months ago ATpoint ★ 4.4k
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Answer: Answer: DESeq2 analysis
14 months ago ATpoint ★ 4.4k
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3.2k
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Answer: Answer: Warning messages in detecting P-values
14 months ago ATpoint ★ 4.4k
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Comment: Comment: Applicability of AUCell to bulk RNA-seq
14 months ago ATpoint ★ 4.4k
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Comment: Comment: RNA seq differential expression analysis for large sample size
14 months ago ATpoint ★ 4.4k
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Comment: Comment: diffbind
14 months ago ATpoint ★ 4.4k
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2.0k
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Answer: Answer: RNA seq differential expression analysis for large sample size
14 months ago ATpoint ★ 4.4k
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704
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Answer: Answer: Affymetrix hgu133plus2.db: How to best derive an expression value for genes that
14 months ago ATpoint ★ 4.4k
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563
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Answer: Answer: Building Multifactor Model in DESeq2
14 months ago ATpoint ★ 4.4k
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649
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Answer: Answer: Read methylation data from tar files on GEO (GSE73303)
14 months ago ATpoint ★ 4.4k
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1.7k
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Answer: Answer: Unable to install DESeq2
14 months ago ATpoint ★ 4.4k
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863
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Answer: Answer: Correct DESeq2 design for tumoral stage differences in tumoral and matched-norma
14 months ago ATpoint ★ 4.4k
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Comment: Comment: I changed the reference in DGE contrasts by DESeq2, but the results changed just
14 months ago ATpoint ★ 4.4k
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Answer: Answer: For limma, if I leave coef=NULL, which test is the P value for?
14 months ago ATpoint ★ 4.4k
971 results • Page 6 of 20
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