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2
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640
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
13 months ago ATpoint ★ 4.8k
1
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430
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Answer: Answer: Perform PCA for sample clustering using DESeq2
13 months ago ATpoint ★ 4.8k
0
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0
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955
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Comment: Comment: Rcpp compilation error
13 months ago ATpoint ★ 4.8k
0
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664
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
13 months ago ATpoint ★ 4.8k
0
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1.1k
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Comment: Comment: DESeq and SVA for batch effect
13 months ago ATpoint ★ 4.8k
0
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526
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Answer: Answer: Unusually large fold-changes in Deseq2 results
13 months ago ATpoint ★ 4.8k
0
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1
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828
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Comment: Comment: Factor vs Character in design
13 months ago ATpoint ★ 4.8k
0
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900
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
13 months ago ATpoint ★ 4.8k
1
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815
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
13 months ago ATpoint ★ 4.8k
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1
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815
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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
13 months ago ATpoint ★ 4.8k
0
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0
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570
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Comment: Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
14 months ago ATpoint ★ 4.8k
0
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1
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681
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Comment: Comment: problem in installing the new version of bioconductor
14 months ago ATpoint ★ 4.8k
1
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0
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634
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
14 months ago ATpoint ★ 4.8k
0
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0
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838
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Comment: Comment: vst transformation and zero counts
14 months ago ATpoint ★ 4.8k
1
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1
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1.5k
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Comment: Comment: Average biological replicates in RNA-seq
14 months ago ATpoint ★ 4.8k
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1
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1.5k
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Comment: Comment: Average biological replicates in RNA-seq
14 months ago ATpoint ★ 4.8k
2
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1.5k
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Answer: Answer: Average biological replicates in RNA-seq
14 months ago ATpoint ★ 4.8k
0
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0
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391
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
14 months ago ATpoint ★ 4.8k
0
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0
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388
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Answer: Answer: Inconsistency in DESeq2 Log fold change
14 months ago ATpoint ★ 4.8k
0
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0
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614
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
14 months ago ATpoint ★ 4.8k
1
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1
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1.4k
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Comment: Comment: How do you post on this forum?
14 months ago ATpoint ★ 4.8k
0
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0
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1.1k
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
14 months ago ATpoint ★ 4.8k
2
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1
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1.4k
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
14 months ago ATpoint ★ 4.8k
0
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0
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12k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
14 months ago ATpoint ★ 4.8k
0
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1
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707
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Comment: Comment: DESeq2 nomalize value
14 months ago ATpoint ★ 4.8k
0
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1
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707
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Answer: Answer: DESeq2 nomalize value
14 months ago ATpoint ★ 4.8k
0
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1
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627
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
15 months ago ATpoint ★ 4.8k
0
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0
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929
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Comment: Comment: WGCNA Soft Power
15 months ago ATpoint ★ 4.8k
0
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1
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1.3k
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
15 months ago ATpoint ★ 4.8k
0
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0
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1.1k
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
15 months ago ATpoint ★ 4.8k
1
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2
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1.1k
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
15 months ago ATpoint ★ 4.8k
0
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1
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1.2k
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
15 months ago ATpoint ★ 4.8k
0
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0
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552
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Comment: Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
15 months ago ATpoint ★ 4.8k
0
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0
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1.6k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
15 months ago ATpoint ★ 4.8k
0
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1
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874
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Comment: Comment: DESeq2 Normalization for QC Samples
15 months ago ATpoint ★ 4.8k
0
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1
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1.6k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
15 months ago ATpoint ★ 4.8k
2
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1
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3.0k
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
15 months ago ATpoint ★ 4.8k
0
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1
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2.0k
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Comment: Comment: Bioconductor installation
15 months ago ATpoint ★ 4.8k
0
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1
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1.6k
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
15 months ago ATpoint ★ 4.8k
0
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0
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856
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Comment: Comment: DESeq with multiple condition
16 months ago ATpoint ★ 4.8k
0
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1
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856
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Answer: Answer: DESeq with multiple condition
16 months ago ATpoint ★ 4.8k
0
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0
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1.6k
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Comment: Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
16 months ago ATpoint ★ 4.8k
1
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0
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783
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Answer: Answer: Deseq2 -Model matrix not full rank error: A complex case
16 months ago ATpoint ★ 4.8k
2
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1
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1.2k
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Answer: Answer: lfcSE always positive. Does this make sense?
16 months ago ATpoint ★ 4.8k
1
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1
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1.1k
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Answer: Answer: Read Count Normalisation and validation of analysis
16 months ago ATpoint ★ 4.8k
0
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1
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1.6k
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
16 months ago ATpoint ★ 4.8k
1
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0
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967
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Answer: Answer: DESeq2: the model matrix is not full rank issue
16 months ago ATpoint ★ 4.8k
0
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0
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1.9k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
16 months ago ATpoint ★ 4.8k
0
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1
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1.9k
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
16 months ago ATpoint ★ 4.8k
1
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0
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1.0k
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Comment: Comment: Different genes expression with limma
16 months ago ATpoint ★ 4.8k
1,056 results • Page 5 of 22
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