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Answer: Answer: DESeq2: FPMs varying based on sample groups used
11 months ago ATpoint ★ 4.4k
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1.0k
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Comment: Comment: Quickly calculating adjusted Fold Change with DESeq2
11 months ago ATpoint ★ 4.4k
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3
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1.6k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
11 months ago ATpoint ★ 4.4k
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2
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922
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Comment: Comment: Mfuzz package loading issues
11 months ago ATpoint ★ 4.4k
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1
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1.6k
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Comment: Comment: Accounting for Batch effect reduces DEGs drastically
11 months ago ATpoint ★ 4.4k
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1
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651
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Comment: Comment: can't update bioconductor 3.18
11 months ago ATpoint ★ 4.4k
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1
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1.4k
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Answer: Answer: DESeq2 Normalization with 4 Groups
11 months ago ATpoint ★ 4.4k
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0
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1.2k
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Comment: Comment: [Bug] Segfault in edgeR::cpm
11 months ago ATpoint ★ 4.4k
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0
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1.2k
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Answer: Answer: choosing rank for GSEA
11 months ago ATpoint ★ 4.4k
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728
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Comment: Comment: Duplicated expression values?
11 months ago ATpoint ★ 4.4k
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1
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921
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Answer: Answer: Using dplyr commands with DataFrame objects
11 months ago ATpoint ★ 4.4k
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1
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711
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Answer: Answer: Differential Expression Cutoffs for n = 1
11 months ago ATpoint ★ 4.4k
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610
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Comment: Comment: edgeR: Time course RNA-seq experiments
11 months ago ATpoint ★ 4.4k
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1.2k
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Answer: Answer: DESeq2: Design model includes sex but only one female
11 months ago ATpoint ★ 4.4k
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0
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865
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Comment: Comment: limma: More differentially expressed genes when factor included in model than wh
11 months ago ATpoint ★ 4.4k
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1
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788
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Answer: Answer: scRNA analysis : DEG between low and high-expressing cells
11 months ago ATpoint ★ 4.4k
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595
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Comment: Comment: Extract LRT results for each comparison
12 months ago ATpoint ★ 4.4k
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2
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1.0k
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Answer: Answer: Biostrings error at retrieving protein sequences
12 months ago ATpoint ★ 4.4k
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595
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Answer: Answer: Extract LRT results for each comparison
12 months ago ATpoint ★ 4.4k
4
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1.4k
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Answer: Answer: ComBat_seq function in sva package does not return a matrix
12 months ago ATpoint ★ 4.4k
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495
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Comment: Comment: Singlecell protein surface (ADT) pseudotime techniques
12 months ago ATpoint ★ 4.4k
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609
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Answer: Answer: Batch effect adjust in model matrix
12 months ago ATpoint ★ 4.4k
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0
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1.1k
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Comment: Comment: For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
12 months ago ATpoint ★ 4.4k
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2
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897
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Comment: Comment: DataFrame Construction With Non-standard Column
12 months ago ATpoint ★ 4.4k
0
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1
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669
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Answer: Answer: DeSeq2 design fails (full model matrix is less than full rank)
12 months ago ATpoint ★ 4.4k
0
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0
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472
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Answer: Answer: Adding chromosome numbers to the respective gene ids of DESeq2 output file
12 months ago ATpoint ★ 4.4k
0
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1
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897
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Comment: Comment: DataFrame Construction With Non-standard Column
12 months ago ATpoint ★ 4.4k
0
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0
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527
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Comment: Comment: TxDb.Dmelanogaster.UCSC.dm3.ensGene
12 months ago ATpoint ★ 4.4k
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2
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2.0k
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Answer: Answer: Differential expression analysis with only FPKM matrix available from total newb
12 months ago ATpoint ★ 4.4k
0
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0
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635
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Comment: Comment: how to adjust other conditions when calling DEGs by DESeq2
12 months ago ATpoint ★ 4.4k
1
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0
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1.4k
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Answer: Answer: Software Compatibility Issue Between phyloseq and lme4 Packages
12 months ago ATpoint ★ 4.4k
0
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6
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36k
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Answer: Answer: SingleR Label.Ont
12 months ago ATpoint ★ 4.4k
1
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0
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2.8k
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Answer: Answer: TPM from STAR mapped counts
12 months ago ATpoint ★ 4.4k
0
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0
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434
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Answer: Answer: Missing genes in the differentially expressed gene list which otherwise are expe
12 months ago ATpoint ★ 4.4k
1
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0
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1.3k
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Comment: Comment: Getting batch corrected counts after RUVSeq
12 months ago ATpoint ★ 4.4k
1
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0
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734
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Comment: Comment: EdgeR and DESeq2, variance estimation and parametric test
12 months ago ATpoint ★ 4.4k
1
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1
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1.3k
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Comment: Comment: Getting batch corrected counts after RUVSeq
12 months ago ATpoint ★ 4.4k
1
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1
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1.3k
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Answer: Answer: Getting batch corrected counts after RUVSeq
12 months ago ATpoint ★ 4.4k
0
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0
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413
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Answer: Answer: Run DESeq2 on chromosome and plasmids separately
12 months ago ATpoint ★ 4.4k
1
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0
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652
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Answer: Answer: bulk RNA-Seq batch correction
12 months ago ATpoint ★ 4.4k
0
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1
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773
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Comment: Comment: AAbin vs DNAbin structures
12 months ago ATpoint ★ 4.4k
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1
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1.4k
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Answer: Answer: MACS2 not installing
13 months ago ATpoint ★ 4.4k
0
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1
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909
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Answer: Answer: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
13 months ago ATpoint ★ 4.4k
0
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0
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1.4k
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Comment: Comment: Is logNormCounts log2 normalised counts as default?
13 months ago ATpoint ★ 4.4k
0
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0
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645
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Answer: Answer: Is it possible to combine count gene expression data coming from one sequencing
13 months ago ATpoint ★ 4.4k
1
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0
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2.1k
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Comment: Comment: PCA percent variance DESeq2
13 months ago ATpoint ★ 4.4k
1
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1
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2.2k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
13 months ago ATpoint ★ 4.4k
0
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0
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591
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Answer: Answer: Speeding up large scale scRNAseq analyses in R and improve memory
13 months ago ATpoint ★ 4.4k
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3.3k
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Comment: Comment: Protein differential Expression analysis
13 months ago ATpoint ★ 4.4k
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0
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527
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Answer: Answer: TOMsimilarityFromExpr the returned matrix has NaN values except for diagonal 1
13 months ago ATpoint ★ 4.4k
971 results • Page 5 of 20
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