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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
10 months ago ATpoint ★ 4.6k
1
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728
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
10 months ago ATpoint ★ 4.6k
0
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0
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637
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Comment: Comment: Help with Complex DESeq2 Design
10 months ago ATpoint ★ 4.6k
0
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1
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572
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Comment: Comment: Visium RNA
10 months ago ATpoint ★ 4.6k
0
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0
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3.0k
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Comment: Comment: Fail BiocManager::install(version='3.12')
10 months ago ATpoint ★ 4.6k
0
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0
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794
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
11 months ago ATpoint ★ 4.6k
0
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1
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669
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
11 months ago ATpoint ★ 4.6k
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1
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1.7k
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Answer: Answer: RNA sequencing raw counts gene filtering
11 months ago ATpoint ★ 4.6k
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0
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439
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Answer: Answer: i'm not getting any differentially expressed genes.
11 months ago ATpoint ★ 4.6k
2
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0
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551
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
11 months ago ATpoint ★ 4.6k
1
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0
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376
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Answer: Answer: Perform PCA for sample clustering using DESeq2
11 months ago ATpoint ★ 4.6k
0
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0
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755
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Comment: Comment: Rcpp compilation error
11 months ago ATpoint ★ 4.6k
0
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0
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575
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
11 months ago ATpoint ★ 4.6k
0
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0
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955
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Comment: Comment: DESeq and SVA for batch effect
11 months ago ATpoint ★ 4.6k
0
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0
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451
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Answer: Answer: Unusually large fold-changes in Deseq2 results
11 months ago ATpoint ★ 4.6k
0
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1
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701
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Comment: Comment: Factor vs Character in design
11 months ago ATpoint ★ 4.6k
0
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0
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796
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
11 months ago ATpoint ★ 4.6k
1
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1
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716
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
11 months ago ATpoint ★ 4.6k
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1
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716
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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
11 months ago ATpoint ★ 4.6k
0
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0
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491
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Comment: Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
11 months ago ATpoint ★ 4.6k
0
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1
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611
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Comment: Comment: problem in installing the new version of bioconductor
11 months ago ATpoint ★ 4.6k
1
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0
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595
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
11 months ago ATpoint ★ 4.6k
0
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0
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760
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Comment: Comment: vst transformation and zero counts
11 months ago ATpoint ★ 4.6k
1
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1
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1.3k
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Comment: Comment: Average biological replicates in RNA-seq
11 months ago ATpoint ★ 4.6k
0
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1
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1.3k
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Comment: Comment: Average biological replicates in RNA-seq
11 months ago ATpoint ★ 4.6k
2
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1
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1.3k
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Answer: Answer: Average biological replicates in RNA-seq
11 months ago ATpoint ★ 4.6k
0
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0
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360
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
11 months ago ATpoint ★ 4.6k
0
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0
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342
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Answer: Answer: Inconsistency in DESeq2 Log fold change
11 months ago ATpoint ★ 4.6k
0
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0
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555
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
12 months ago ATpoint ★ 4.6k
1
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1
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1.2k
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Comment: Comment: How do you post on this forum?
12 months ago ATpoint ★ 4.6k
0
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0
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913
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
12 months ago ATpoint ★ 4.6k
2
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1
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1.2k
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
12 months ago ATpoint ★ 4.6k
0
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0
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10k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
12 months ago ATpoint ★ 4.6k
0
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1
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653
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Comment: Comment: DESeq2 nomalize value
12 months ago ATpoint ★ 4.6k
0
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1
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653
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Answer: Answer: DESeq2 nomalize value
12 months ago ATpoint ★ 4.6k
0
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1
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567
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
12 months ago ATpoint ★ 4.6k
0
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0
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828
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Comment: Comment: WGCNA Soft Power
12 months ago ATpoint ★ 4.6k
0
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1
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1.1k
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
12 months ago ATpoint ★ 4.6k
0
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0
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915
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
13 months ago ATpoint ★ 4.6k
1
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2
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915
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
13 months ago ATpoint ★ 4.6k
0
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1
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1.0k
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
13 months ago ATpoint ★ 4.6k
0
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0
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507
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Comment: Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
13 months ago ATpoint ★ 4.6k
0
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0
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1.4k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
13 months ago ATpoint ★ 4.6k
0
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1
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794
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Comment: Comment: DESeq2 Normalization for QC Samples
13 months ago ATpoint ★ 4.6k
0
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1
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1.4k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
13 months ago ATpoint ★ 4.6k
2
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1
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2.3k
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
13 months ago ATpoint ★ 4.6k
0
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1
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1.7k
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Comment: Comment: Bioconductor installation
13 months ago ATpoint ★ 4.6k
0
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1
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1.4k
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
13 months ago ATpoint ★ 4.6k
0
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0
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778
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Comment: Comment: DESeq with multiple condition
13 months ago ATpoint ★ 4.6k
0
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1
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778
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Answer: Answer: DESeq with multiple condition
13 months ago ATpoint ★ 4.6k
1,017 results • Page 4 of 21
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