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Answer: Answer: Differential gene expression analysis results
11 months ago ATpoint ★ 4.8k
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Answer: Answer: normalization using Deseq2
11 months ago ATpoint ★ 4.8k
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Comment: Comment: deseq2 results
11 months ago ATpoint ★ 4.8k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
11 months ago ATpoint ★ 4.8k
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Comment: Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
11 months ago ATpoint ★ 4.8k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
11 months ago ATpoint ★ 4.8k
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615
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Comment: Comment: Couldn't connect to server while using "pathways"
11 months ago ATpoint ★ 4.8k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
11 months ago ATpoint ★ 4.8k
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Answer: Answer: fgsea significant result
11 months ago ATpoint ★ 4.8k
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
11 months ago ATpoint ★ 4.8k
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755
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
11 months ago ATpoint ★ 4.8k
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1.1k
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
11 months ago ATpoint ★ 4.8k
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2.6k
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
11 months ago ATpoint ★ 4.8k
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361
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Answer: Answer: putting my own expression data in deseq2
11 months ago ATpoint ★ 4.8k
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872
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Comment: Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
11 months ago ATpoint ★ 4.8k
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
11 months ago ATpoint ★ 4.8k
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Answer: Answer: ATACseq merge peaks
12 months ago ATpoint ★ 4.8k
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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
12 months ago ATpoint ★ 4.8k
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557
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
12 months ago ATpoint ★ 4.8k
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
12 months ago ATpoint ★ 4.8k
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
12 months ago ATpoint ★ 4.8k
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Answer: Answer: Different Shrunk Log2FC according with reference
12 months ago ATpoint ★ 4.8k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
12 months ago ATpoint ★ 4.8k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
12 months ago ATpoint ★ 4.8k
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689
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
12 months ago ATpoint ★ 4.8k
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689
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
12 months ago ATpoint ★ 4.8k
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325
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Comment: Comment: Input Question for deseq.r
12 months ago ATpoint ★ 4.8k
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359
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
12 months ago ATpoint ★ 4.8k
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Comment: Comment: Deseq2 Rlog transformation
12 months ago ATpoint ★ 4.8k
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1.3k
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
12 months ago ATpoint ★ 4.8k
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Comment: Comment: Not fully paired differential gene expression analysis
12 months ago ATpoint ★ 4.8k
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813
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Comment: Comment: [DiffBind] Obtaining normalization factors
12 months ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
12 months ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
12 months ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
12 months ago ATpoint ★ 4.8k
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751
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Answer: Answer: Can you find the correct transcript in scRNA seq data
12 months ago ATpoint ★ 4.8k
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1.1k
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Comment: Comment: Not fully paired differential gene expression analysis
12 months ago ATpoint ★ 4.8k
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720
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
12 months ago ATpoint ★ 4.8k
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Comment: Comment: PCA of different bacterial species
13 months ago ATpoint ★ 4.8k
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731
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
13 months ago ATpoint ★ 4.8k
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874
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
13 months ago ATpoint ★ 4.8k
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874
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
13 months ago ATpoint ★ 4.8k
1
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911
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
13 months ago ATpoint ★ 4.8k
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774
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Comment: Comment: Help with Complex DESeq2 Design
13 months ago ATpoint ★ 4.8k
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640
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Comment: Comment: Visium RNA
13 months ago ATpoint ★ 4.8k
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3.3k
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Comment: Comment: Fail BiocManager::install(version='3.12')
13 months ago ATpoint ★ 4.8k
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935
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
13 months ago ATpoint ★ 4.8k
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744
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
13 months ago ATpoint ★ 4.8k
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2.4k
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Answer: Answer: RNA sequencing raw counts gene filtering
13 months ago ATpoint ★ 4.8k
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481
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Answer: Answer: i'm not getting any differentially expressed genes.
13 months ago ATpoint ★ 4.8k
1,056 results • Page 4 of 22
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