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Comment: Comment: Bioconductor installation
8 months ago ATpoint ★ 4.4k
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Answer: Answer: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
8 months ago ATpoint ★ 4.4k
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610
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Comment: Comment: DESeq with multiple condition
9 months ago ATpoint ★ 4.4k
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610
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Answer: Answer: DESeq with multiple condition
9 months ago ATpoint ★ 4.4k
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984
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Comment: Comment: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
9 months ago ATpoint ★ 4.4k
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572
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Answer: Answer: Deseq2 -Model matrix not full rank error: A complex case
9 months ago ATpoint ★ 4.4k
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749
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Answer: Answer: lfcSE always positive. Does this make sense?
9 months ago ATpoint ★ 4.4k
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823
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Answer: Answer: Read Count Normalisation and validation of analysis
9 months ago ATpoint ★ 4.4k
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984
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Answer: Answer: Should I use the 'log2FoldChange' from lfcShrink() to subset significant DEGs?
9 months ago ATpoint ★ 4.4k
1
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731
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Answer: Answer: DESeq2: the model matrix is not full rank issue
9 months ago ATpoint ★ 4.4k
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1.3k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
9 months ago ATpoint ★ 4.4k
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1.3k
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Answer: Answer: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
9 months ago ATpoint ★ 4.4k
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801
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Comment: Comment: Different genes expression with limma
9 months ago ATpoint ★ 4.4k
0
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579
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Answer: Answer: tximport error with rsem files
9 months ago ATpoint ★ 4.4k
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0
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483
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Answer: Answer: Running DESeq on normalized data
9 months ago ATpoint ★ 4.4k
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493
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Comment: Comment: Inconsistent results in DiffBind
9 months ago ATpoint ★ 4.4k
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513
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Comment: Comment: Can't download Bioconductor
9 months ago ATpoint ★ 4.4k
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2
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1.4k
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
9 months ago ATpoint ★ 4.4k
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1.4k
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Comment: Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
9 months ago ATpoint ★ 4.4k
0
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2.9k
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Comment: Comment: JoinLayers function for Seurat Object for annotation with SingleR
9 months ago ATpoint ★ 4.4k
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1.0k
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Comment: Comment: DESeq2 : stat or lfcshrink for GSEA analysis
9 months ago ATpoint ★ 4.4k
4
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1.7k
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Answer: Answer: WGCNA documentation not available
9 months ago ATpoint ★ 4.4k
1
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1.3k
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Answer: Answer: ScRNAseq analysis scran :: quickcluster Error
9 months ago ATpoint ★ 4.4k
1
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0
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531
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Comment: Comment: DiffBind getting Fold values of near 0
9 months ago ATpoint ★ 4.4k
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2.2k
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Answer: Answer: SingleR annotation of several slots/patients
9 months ago ATpoint ★ 4.4k
0
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1
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994
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Answer: Answer: How does Deseq2 deal with the row with zero when calculating size factors
9 months ago ATpoint ★ 4.4k
0
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1
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963
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Comment: Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
10 months ago ATpoint ★ 4.4k
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0
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538
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Answer: Answer: Differential gene expression analysis
10 months ago ATpoint ★ 4.4k
0
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0
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582
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Comment: Comment: bam or VCF files from GSE75010
10 months ago ATpoint ★ 4.4k
0
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1
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1.1k
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Answer: Answer: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i
10 months ago ATpoint ★ 4.4k
0
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1
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477
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Answer: Answer: WGCNA less samples
10 months ago ATpoint ★ 4.4k
0
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1
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1.2k
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Comment: Comment: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
10 months ago ATpoint ★ 4.4k
1
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1.2k
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Answer: Answer: DropletUtils read10xcounts adds the 12 Cell Multiplexing Oligo tags as gene name
10 months ago ATpoint ★ 4.4k
1
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1
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840
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Answer: Answer: DESeq2 estimateSizeFactors iterate takes too long
10 months ago ATpoint ★ 4.4k
1
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1
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1.2k
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Answer: Answer: How to find stop codons for a list of genes
10 months ago ATpoint ★ 4.4k
0
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564
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Comment: Comment: Fail to annotate chromosome data to single cell sequencing data obtained from ce
10 months ago ATpoint ★ 4.4k
0
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2.6k
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Comment: Comment: Error when Installing BioConductor Package ('affy')
10 months ago ATpoint ★ 4.4k
0
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0
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406
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Answer: Answer: DESeq2 design with unbalance data and a multifactor design
10 months ago ATpoint ★ 4.4k
0
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0
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1.4k
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Comment: Comment: trying to add SingleR label to Seurat Object fails
10 months ago ATpoint ★ 4.4k
0
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0
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7.9k
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Comment: Comment: scater runUMAP fails with error "function 'as_cholmod_sparse' not provided by pa
10 months ago ATpoint ★ 4.4k
0
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0
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673
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Answer: Answer: WGCNA tutorial docs needed: Horvath Lab site down
10 months ago ATpoint ★ 4.4k
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0
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1.2k
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Answer: Answer: weird volcano plot
10 months ago ATpoint ★ 4.4k
2
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1
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1.2k
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Comment: Comment: weird volcano plot
10 months ago ATpoint ★ 4.4k
0
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0
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1.0k
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Comment: Comment: DESeq2 unable to handle large count values
10 months ago ATpoint ★ 4.4k
2
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1
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1.4k
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Answer: Answer: SparseArray unable to install on Bioc 3.18
10 months ago ATpoint ★ 4.4k
0
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1
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769
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Comment: Comment: rnaSeqGene workflow not available in Bioconductor 3.18
10 months ago ATpoint ★ 4.4k
0
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637
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Comment: Comment: DESeq2: FPMs varying based on sample groups used
10 months ago ATpoint ★ 4.4k
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1
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1.3k
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Answer: Answer: MA plot for DESEq2 analysis
10 months ago ATpoint ★ 4.4k
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0
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434
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Answer: Answer: DESeqResults object -> extract statistics results with rownames (gene)
10 months ago ATpoint ★ 4.4k
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1
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2.4k
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Comment: Comment: Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu
10 months ago ATpoint ★ 4.4k
971 results • Page 4 of 20
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