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Comment: Comment: Slightly different count plots from R and spreadsheet
8 months ago ATpoint ★ 4.6k
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2
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931
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Comment: Comment: all variables in design formula must be columns in colData (Deseq2) error
8 months ago ATpoint ★ 4.6k
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931
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Answer: Answer: all variables in design formula must be columns in colData (Deseq2) error
8 months ago ATpoint ★ 4.6k
1
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894
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
8 months ago ATpoint ★ 4.6k
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894
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
8 months ago ATpoint ★ 4.6k
1
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1
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894
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
8 months ago ATpoint ★ 4.6k
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1
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796
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Comment: Comment: Problem installing ChAMP on a MacBook
8 months ago ATpoint ★ 4.6k
1
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817
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Comment: Comment: How to correctly adjust for gender in edgeR
8 months ago ATpoint ★ 4.6k
1
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894
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
8 months ago ATpoint ★ 4.6k
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423
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Answer: Answer: Differential gene expression analysis results
9 months ago ATpoint ★ 4.6k
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439
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Answer: Answer: normalization using Deseq2
9 months ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: deseq2 results
9 months ago ATpoint ★ 4.6k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
9 months ago ATpoint ★ 4.6k
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1.9k
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Comment: Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
9 months ago ATpoint ★ 4.6k
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1.2k
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Comment: Comment: Extremely small p-values using Limma for proteomic data
9 months ago ATpoint ★ 4.6k
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525
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Comment: Comment: Couldn't connect to server while using "pathways"
9 months ago ATpoint ★ 4.6k
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1.1k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
9 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: fgsea significant result
9 months ago ATpoint ★ 4.6k
0
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917
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
9 months ago ATpoint ★ 4.6k
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644
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
9 months ago ATpoint ★ 4.6k
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917
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
9 months ago ATpoint ★ 4.6k
1
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1
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1.9k
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
9 months ago ATpoint ★ 4.6k
0
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321
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Answer: Answer: putting my own expression data in deseq2
9 months ago ATpoint ★ 4.6k
1
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0
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697
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Comment: Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
9 months ago ATpoint ★ 4.6k
2
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697
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
9 months ago ATpoint ★ 4.6k
0
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865
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Answer: Answer: ATACseq merge peaks
9 months ago ATpoint ★ 4.6k
0
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642
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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
9 months ago ATpoint ★ 4.6k
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480
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
9 months ago ATpoint ★ 4.6k
1
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2
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480
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
9 months ago ATpoint ★ 4.6k
0
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614
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
9 months ago ATpoint ★ 4.6k
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506
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Answer: Answer: Different Shrunk Log2FC according with reference
9 months ago ATpoint ★ 4.6k
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1.7k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
9 months ago ATpoint ★ 4.6k
2
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1
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2.4k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
9 months ago ATpoint ★ 4.6k
0
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1
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609
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
9 months ago ATpoint ★ 4.6k
0
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1
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609
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
9 months ago ATpoint ★ 4.6k
0
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0
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298
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Comment: Comment: Input Question for deseq.r
9 months ago ATpoint ★ 4.6k
0
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317
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
9 months ago ATpoint ★ 4.6k
0
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293
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Comment: Comment: Deseq2 Rlog transformation
9 months ago ATpoint ★ 4.6k
0
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1
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980
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
10 months ago • updated 9 months ago ATpoint ★ 4.6k
1
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0
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971
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Comment: Comment: Not fully paired differential gene expression analysis
10 months ago ATpoint ★ 4.6k
1
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1
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696
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Comment: Comment: [DiffBind] Obtaining normalization factors
10 months ago ATpoint ★ 4.6k
1
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1
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997
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
10 months ago ATpoint ★ 4.6k
1
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1
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997
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
10 months ago ATpoint ★ 4.6k
1
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1
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997
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
10 months ago ATpoint ★ 4.6k
0
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0
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610
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Answer: Answer: Can you find the correct transcript in scRNA seq data
10 months ago ATpoint ★ 4.6k
1
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0
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971
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Comment: Comment: Not fully paired differential gene expression analysis
10 months ago ATpoint ★ 4.6k
0
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0
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605
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Comment: Comment: Bluster and Varieties of Louvain Clulstering
10 months ago ATpoint ★ 4.6k
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0
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954
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Comment: Comment: PCA of different bacterial species
10 months ago ATpoint ★ 4.6k
2
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0
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639
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
10 months ago ATpoint ★ 4.6k
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1
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751
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
10 months ago ATpoint ★ 4.6k
1,017 results • Page 3 of 21
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