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Comment: Comment: Bluster and Varieties of Louvain Clulstering
5 months ago ATpoint ★ 4.4k
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Comment: Comment: PCA of different bacterial species
6 months ago ATpoint ★ 4.4k
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Answer: Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
6 months ago ATpoint ★ 4.4k
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544
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
6 months ago ATpoint ★ 4.4k
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544
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Comment: Comment: EDAseq to normalise for both gene-length and GC-content
6 months ago ATpoint ★ 4.4k
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539
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Comment: Comment: Extracting genomic sequences using agat and bedtools yields different results
6 months ago ATpoint ★ 4.4k
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483
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Comment: Comment: Help with Complex DESeq2 Design
6 months ago ATpoint ★ 4.4k
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482
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Comment: Comment: Visium RNA
6 months ago ATpoint ★ 4.4k
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Comment: Comment: Fail BiocManager::install(version='3.12')
6 months ago ATpoint ★ 4.4k
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534
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Comment: Comment: Missing Band on Volcano Plot from DESeq2
6 months ago ATpoint ★ 4.4k
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522
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Comment: Comment: Scores used for DiffBind's dba.plotHeatmap
6 months ago ATpoint ★ 4.4k
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834
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Answer: Answer: RNA sequencing raw counts gene filtering
6 months ago ATpoint ★ 4.4k
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354
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Answer: Answer: i'm not getting any differentially expressed genes.
6 months ago ATpoint ★ 4.4k
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427
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Answer: Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
6 months ago ATpoint ★ 4.4k
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301
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Answer: Answer: Perform PCA for sample clustering using DESeq2
6 months ago ATpoint ★ 4.4k
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464
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Comment: Comment: Rcpp compilation error
6 months ago ATpoint ★ 4.4k
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428
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Answer: Answer: DESeq2 for pseudobulk analysis of scCITE-seq
6 months ago ATpoint ★ 4.4k
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743
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Comment: Comment: DESeq and SVA for batch effect
6 months ago ATpoint ★ 4.4k
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338
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Answer: Answer: Unusually large fold-changes in Deseq2 results
6 months ago ATpoint ★ 4.4k
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574
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Comment: Comment: Factor vs Character in design
6 months ago ATpoint ★ 4.4k
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638
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
6 months ago ATpoint ★ 4.4k
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565
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Comment: Comment: Further clarification of unbalanced group sizes DESeq2
7 months ago ATpoint ★ 4.4k
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565
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Answer: Answer: Further clarification of unbalanced group sizes DESeq2
7 months ago ATpoint ★ 4.4k
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393
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Comment: Comment: How to select cells that represents more accurately a cluster in a scRNA-seq dat
7 months ago ATpoint ★ 4.4k
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500
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Comment: Comment: problem in installing the new version of bioconductor
7 months ago ATpoint ★ 4.4k
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501
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Answer: Answer: Filter genes that have >= 1 cpm and are expressed in 80% of the case in the grou
7 months ago ATpoint ★ 4.4k
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604
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Comment: Comment: vst transformation and zero counts
7 months ago ATpoint ★ 4.4k
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989
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Comment: Comment: Average biological replicates in RNA-seq
7 months ago ATpoint ★ 4.4k
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989
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Comment: Comment: Average biological replicates in RNA-seq
7 months ago ATpoint ★ 4.4k
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989
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Answer: Answer: Average biological replicates in RNA-seq
7 months ago ATpoint ★ 4.4k
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308
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Answer: Answer: Problems with filtering DESeq Results (log2fold change)
7 months ago ATpoint ★ 4.4k
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274
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Answer: Answer: Inconsistency in DESeq2 Log fold change
7 months ago ATpoint ★ 4.4k
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448
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Answer: Answer: DESeq2 Results in Different Pvalue & Log2FC using the same code and data
7 months ago ATpoint ★ 4.4k
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925
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Comment: Comment: How do you post on this forum?
7 months ago ATpoint ★ 4.4k
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613
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Comment: Comment: WGCNA | plotDendroAndColors ERROR
7 months ago ATpoint ★ 4.4k
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820
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Answer: Answer: Graphing DEseq2 Normalized Counts using ggplot2
7 months ago ATpoint ★ 4.4k
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8.5k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
7 months ago ATpoint ★ 4.4k
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558
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Comment: Comment: DESeq2 nomalize value
7 months ago ATpoint ★ 4.4k
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558
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Answer: Answer: DESeq2 nomalize value
7 months ago ATpoint ★ 4.4k
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459
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Answer: Answer: Cross-species analysis using DESeq2 - size factor computation
8 months ago ATpoint ★ 4.4k
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626
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Comment: Comment: WGCNA Soft Power
8 months ago ATpoint ★ 4.4k
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868
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Comment: Comment: Merging of Human and Mouse SingleCellExperiment Objects Error
8 months ago ATpoint ★ 4.4k
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713
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
8 months ago ATpoint ★ 4.4k
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2
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713
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Comment: Comment: Batch-resolved visualization after RUVg normalization?
8 months ago ATpoint ★ 4.4k
0
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1
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750
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Answer: Answer: scran package: quickCluster and calculateSumFactors parallelization
8 months ago ATpoint ★ 4.4k
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407
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Comment: Comment: Conversion of .sf to .rgel format for the salmon processed files with transcript
8 months ago ATpoint ★ 4.4k
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1.0k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
8 months ago ATpoint ★ 4.4k
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656
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Comment: Comment: DESeq2 Normalization for QC Samples
8 months ago ATpoint ★ 4.4k
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1.0k
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Comment: Comment: Can SVs identified from sva be used for removeBatchEffect() in DESeq2
8 months ago ATpoint ★ 4.4k
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1.5k
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Answer: Answer: DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
8 months ago ATpoint ★ 4.4k
971 results • Page 3 of 20
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