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Comment: Comment: DiffBind full library size not reliable
8 months ago ATpoint ★ 4.8k
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762
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Comment: Comment: Optimizing CPM Calculation for Varied RNA-seq Data
8 months ago ATpoint ★ 4.8k
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2
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965
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Comment: Comment: DiffBind full library size not reliable
8 months ago ATpoint ★ 4.8k
0
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1
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965
views
Comment: Comment: DiffBind full library size not reliable
8 months ago ATpoint ★ 4.8k
0
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1
reply
965
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Comment: Comment: DiffBind full library size not reliable
8 months ago ATpoint ★ 4.8k
0
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0
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842
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Answer: Answer: Validity of SingleR with very small bulk RNAseq reference
8 months ago ATpoint ★ 4.8k
2
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2
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2.3k
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Answer: Answer: Plot PCA with ellipses using ggplot
8 months ago ATpoint ★ 4.8k
0
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0
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1.1k
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Comment: Comment: Recount3: PCR duplicates
9 months ago ATpoint ★ 4.8k
0
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0
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741
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Comment: Comment: Error when trying to do different pairwise comparisons and lfcshrink than what's
9 months ago ATpoint ★ 4.8k
0
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1
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741
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Answer: Answer: Error when trying to do different pairwise comparisons and lfcshrink than what's
9 months ago ATpoint ★ 4.8k
0
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0
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892
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Answer: Answer: How to rank DEG for GSEA using DEseq2 result ?
9 months ago ATpoint ★ 4.8k
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429
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Answer: Answer: Run DEXSeq successfully but got a result that padj==1 in all genes
9 months ago ATpoint ★ 4.8k
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463
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Comment: Comment: output from RAIN doesn't look rhythmic
9 months ago ATpoint ★ 4.8k
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372
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Answer: Answer: unreal negative log2fc values
9 months ago ATpoint ★ 4.8k
0
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1
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720
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Comment: Comment: How to search Pubmed Central or other fulltext literature base using regex?
9 months ago ATpoint ★ 4.8k
0
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2
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997
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
10 months ago ATpoint ★ 4.8k
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1
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1.7k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
10 months ago ATpoint ★ 4.8k
1
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0
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567
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Answer: Answer: DESeq2 - vst() - log2FC - no replicates
10 months ago ATpoint ★ 4.8k
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0
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1.3k
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Answer: Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
10 months ago ATpoint ★ 4.8k
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1
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1.1k
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Comment: Comment: Create multiple DoparParams with different number of registered cores
10 months ago ATpoint ★ 4.8k
2
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6
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1.1k
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Create multiple DoparParams with different number of registered cores
BiocParallel
updated 10 months ago by 68k • written 10 months ago by ★ 4.8k
0
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1
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1.1k
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Comment: Comment: Create multiple DoparParams with different number of registered cores
10 months ago ATpoint ★ 4.8k
0
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1
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818
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
10 months ago ATpoint ★ 4.8k
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1
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818
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
10 months ago ATpoint ★ 4.8k
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0
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3.1k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
10 months ago ATpoint ★ 4.8k
0
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0
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643
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Comment: Comment: When I tried to use the functions from the celldex package to fetch information,
10 months ago ATpoint ★ 4.8k
0
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0
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2.5k
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Comment: Comment: Issues with installing Bioconductor packages (eg GEOquery)
10 months ago ATpoint ★ 4.8k
0
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1
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2.5k
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Answer: Answer: Issues with installing Bioconductor packages (eg GEOquery)
10 months ago ATpoint ★ 4.8k
0
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0
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418
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Answer: Answer: How to access the Bioconductor in Windows
10 months ago ATpoint ★ 4.8k
0
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0
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585
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Comment: Comment: Ploting of normalized counts after batch removal
10 months ago ATpoint ★ 4.8k
1
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0
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609
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Answer: Answer: Deseq2
10 months ago ATpoint ★ 4.8k
0
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0
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1.6k
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Comment: Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
10 months ago ATpoint ★ 4.8k
0
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1
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945
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Comment: Comment: Counter-directional LFC shrinkage
10 months ago ATpoint ★ 4.8k
0
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0
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1.8k
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
11 months ago ATpoint ★ 4.8k
0
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1
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760
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Answer: Answer: Normalisation using clinical traits in RNA seq using DESeq2
11 months ago ATpoint ★ 4.8k
0
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1
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1.8k
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Answer: Answer: Volcano plot of scRNA-seq data not "centered"
11 months ago ATpoint ★ 4.8k
0
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1
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1.8k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
11 months ago ATpoint ★ 4.8k
0
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1
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1.8k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
11 months ago ATpoint ★ 4.8k
2
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1
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814
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Answer: Answer: Get gene symbols for a set of hg19 coordinates
11 months ago ATpoint ★ 4.8k
1
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1
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3.8k
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Comment: Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
11 months ago ATpoint ★ 4.8k
1
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0
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735
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Comment: Comment: unable to access bioconductor packages - qvalue installation failed...
11 months ago ATpoint ★ 4.8k
0
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1
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924
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Comment: Comment: Slightly different count plots from R and spreadsheet
11 months ago ATpoint ★ 4.8k
0
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2
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1.2k
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Comment: Comment: all variables in design formula must be columns in colData (Deseq2) error
11 months ago ATpoint ★ 4.8k
0
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1
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1.2k
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Answer: Answer: all variables in design formula must be columns in colData (Deseq2) error
11 months ago ATpoint ★ 4.8k
1
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0
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1.0k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
11 months ago ATpoint ★ 4.8k
0
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1
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1.0k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
11 months ago ATpoint ★ 4.8k
1
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1
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1.0k
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
11 months ago ATpoint ★ 4.8k
0
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1
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907
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Comment: Comment: Problem installing ChAMP on a MacBook
11 months ago ATpoint ★ 4.8k
1
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0
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948
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Comment: Comment: How to correctly adjust for gender in edgeR
11 months ago ATpoint ★ 4.8k
1
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1
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1.0k
views
Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
11 months ago ATpoint ★ 4.8k
1,056 results • Page 3 of 22
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