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3
votes
1
reply
1.9k
views
Correct use of TMM / normalization factors based on large bins
csaw TMM
5.1 years ago ATpoint ★ 4.4k
0
votes
0
replies
1.2k
views
Comment: C: Problem in featureCounts file.
5.2 years ago ATpoint ★ 4.4k
0
votes
2
replies
2.0k
views
Comment: C: Paired samples in cell lines using deseq2
5.2 years ago ATpoint ★ 4.4k
0
votes
1
reply
1.2k
views
Comment: C: Creating contrasts which do not include the reference level in limma, edgeR or D
5.2 years ago ATpoint ★ 4.4k
0
votes
0
replies
2.9k
views
Comment: C: Anbiguous instruction on how to set the blind value in DESeq2's vst function
5.2 years ago ATpoint ★ 4.4k
2
votes
2
replies
820
views
InTAD: Sample Size and Statistical Power
InTAD
updated 5.2 years ago by ▴ 40 • written 5.2 years ago by ★ 4.4k
1
vote
0
replies
1.1k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
5.4 years ago ATpoint ★ 4.4k
0
votes
0
replies
2.4k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
5.4 years ago ATpoint ★ 4.4k
0
votes
0
replies
2.4k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
5.4 years ago ATpoint ★ 4.4k
0
votes
0
replies
925
views
Comment: C: scATAC-seq analysis, data preprocessing
5.4 years ago ATpoint ★ 4.4k
0
votes
1
reply
2.4k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
5.4 years ago ATpoint ★ 4.4k
0
votes
0
replies
2.4k
views
Comment: C: Correct use of tximport in combination with edgeR cpm()
5.4 years ago ATpoint ★ 4.4k
2
votes
1
reply
1.1k
views
Deactivate svalue=T in lfcShrink - DESeq2 - apeglm
deseq2 apeglm
updated 5.5 years ago by 42k • written 5.5 years ago by ★ 4.4k
0
votes
1
reply
2.3k
views
Comment: C: Unexpected MAplot after apeglm shrinkage in DESeq2
5.7 years ago ATpoint ★ 4.4k
0
votes
0
replies
1.2k
views
Comment: C: DESeq2 MA plot normalisation Issue
5.9 years ago ATpoint ★ 4.4k
4
votes
4
replies
2.3k
views
Unexpected MAplot after apeglm shrinkage in DESeq2
apeglm deseq2 rna-seq
updated 5.9 years ago by 42k • written 5.9 years ago by ★ 4.4k
2
votes
1
reply
1.1k
views
Significant reporter activity with mpralm function
mpra mpralm reporter assay linear model
6.3 years ago ATpoint ★ 4.4k
0
votes
1
reply
18k
views
Comment: C: Normalization in DESeq2
7.1 years ago ATpoint ★ 4.4k
0
votes
1
reply
18k
views
Comment: C: Normalization in DESeq2
7.1 years ago ATpoint ★ 4.4k
0
votes
0
replies
4.8k
views
Comment: C: Differential binding of ATAC-seq data with no replicates
7.1 years ago ATpoint ★ 4.4k
0
votes
1
reply
18k
views
Comment: C: Normalization in DESeq2
7.2 years ago ATpoint ★ 4.4k
971 results • Page 20 of 20
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