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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
4 months ago ATpoint ★ 4.4k
2
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440
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Answer: Answer: Get gene symbols for a set of hg19 coordinates
4 months ago ATpoint ★ 4.4k
1
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1
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1.7k
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Comment: Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
4 months ago ATpoint ★ 4.4k
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0
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375
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Comment: Comment: unable to access bioconductor packages - qvalue installation failed...
4 months ago ATpoint ★ 4.4k
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1
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573
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Comment: Comment: Slightly different count plots from R and spreadsheet
4 months ago ATpoint ★ 4.4k
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2
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606
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Comment: Comment: all variables in design formula must be columns in colData (Deseq2) error
4 months ago ATpoint ★ 4.4k
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1
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606
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Answer: Answer: all variables in design formula must be columns in colData (Deseq2) error
4 months ago ATpoint ★ 4.4k
1
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0
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641
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
4 months ago ATpoint ★ 4.4k
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1
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641
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
4 months ago ATpoint ★ 4.4k
1
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1
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641
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
4 months ago ATpoint ★ 4.4k
0
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1
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569
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Comment: Comment: Problem installing ChAMP on a MacBook
4 months ago ATpoint ★ 4.4k
1
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0
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556
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Comment: Comment: How to correctly adjust for gender in edgeR
4 months ago ATpoint ★ 4.4k
1
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1
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641
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Comment: Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
4 months ago ATpoint ★ 4.4k
0
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0
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327
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Answer: Answer: Differential gene expression analysis results
4 months ago ATpoint ★ 4.4k
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295
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Answer: Answer: normalization using Deseq2
4 months ago ATpoint ★ 4.4k
0
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1
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885
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Comment: Comment: deseq2 results
4 months ago ATpoint ★ 4.4k
0
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1
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878
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Comment: Comment: Extremely small p-values using Limma for proteomic data
4 months ago ATpoint ★ 4.4k
0
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0
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864
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Comment: Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
4 months ago ATpoint ★ 4.4k
0
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1
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878
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Comment: Comment: Extremely small p-values using Limma for proteomic data
4 months ago ATpoint ★ 4.4k
0
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0
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411
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Comment: Comment: Couldn't connect to server while using "pathways"
4 months ago ATpoint ★ 4.4k
0
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1
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722
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Comment: Comment: Too many significant genes when integrating gtex and tcga
4 months ago ATpoint ★ 4.4k
2
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1
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686
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Answer: Answer: fgsea significant result
4 months ago ATpoint ★ 4.4k
0
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586
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
4 months ago ATpoint ★ 4.4k
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1
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441
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Answer: Answer: Deseq2 and Normalization of RNA sequencing data
4 months ago ATpoint ★ 4.4k
0
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1
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586
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Comment: Comment: Differences in differential analysis methods for RNA-Seq
4 months ago ATpoint ★ 4.4k
1
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1
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864
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Answer: Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
4 months ago ATpoint ★ 4.4k
0
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0
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250
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Answer: Answer: putting my own expression data in deseq2
5 months ago ATpoint ★ 4.4k
1
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0
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463
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Comment: Comment: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
5 months ago ATpoint ★ 4.4k
2
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1
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463
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Answer: Answer: DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
5 months ago ATpoint ★ 4.4k
0
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0
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535
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Answer: Answer: ATACseq merge peaks
5 months ago ATpoint ★ 4.4k
0
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0
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441
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Comment: Comment: Deseq2. decontXcounts not integers. Useful alternative?
5 months ago ATpoint ★ 4.4k
0
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0
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348
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Comment: Comment: Reproducibility issue with scran together with lapply and BiocParallel
5 months ago ATpoint ★ 4.4k
1
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2
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348
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
5 months ago ATpoint ★ 4.4k
0
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1
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465
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Comment: Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
5 months ago ATpoint ★ 4.4k
0
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1
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393
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Answer: Answer: Different Shrunk Log2FC according with reference
5 months ago ATpoint ★ 4.4k
0
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1
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901
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Comment: Comment: DESeq2 output used for PCA plot on R studio
5 months ago ATpoint ★ 4.4k
2
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1
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1.9k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
5 months ago ATpoint ★ 4.4k
0
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1
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479
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
5 months ago ATpoint ★ 4.4k
0
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1
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479
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Comment: Comment: Differential peaks that were not identified in diffbind were identified in diseq
5 months ago ATpoint ★ 4.4k
0
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0
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225
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Comment: Comment: Input Question for deseq.r
5 months ago ATpoint ★ 4.4k
0
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0
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256
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Answer: Answer: DESEQ2 output gives multiple groups when only 2 groups are present
5 months ago ATpoint ★ 4.4k
0
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0
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247
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Comment: Comment: Deseq2 Rlog transformation
5 months ago ATpoint ★ 4.4k
0
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1
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567
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Comment: Comment: A ComBat-seq issue: the covariates are confounded
5 months ago ATpoint ★ 4.4k
1
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0
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766
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Comment: Comment: Not fully paired differential gene expression analysis
5 months ago ATpoint ★ 4.4k
1
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1
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454
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Comment: Comment: [DiffBind] Obtaining normalization factors
5 months ago ATpoint ★ 4.4k
1
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1
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691
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
5 months ago ATpoint ★ 4.4k
1
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1
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691
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
5 months ago ATpoint ★ 4.4k
1
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1
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691
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Comment: Comment: Surrogate variable analysis for paired RNA seq experiment
5 months ago ATpoint ★ 4.4k
0
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0
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363
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Answer: Answer: Can you find the correct transcript in scRNA seq data
5 months ago ATpoint ★ 4.4k
1
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0
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766
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Comment: Comment: Not fully paired differential gene expression analysis
5 months ago ATpoint ★ 4.4k
971 results • Page 2 of 20
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