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0
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530
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Comment: Comment: Gene filtering in DESeq2
5 months ago ATpoint ★ 4.6k
1
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0
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327
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Answer: Answer: Deseq2 - differenc in results
5 months ago ATpoint ★ 4.6k
3
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3
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589
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voom does not seem to properly correct for library size
limma
updated 5 months ago by 52k • written 5 months ago by ★ 4.6k
0
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0
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589
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Comment: Comment: voom does not seem to properly correct for library size
5 months ago ATpoint ★ 4.6k
0
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1
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602
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Answer: Answer: More significant genes after lfcShrink in DEseq2?
5 months ago ATpoint ★ 4.6k
1
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1
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884
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Comment: Comment: RNASeq normlization for samples with global shift in gene expression
5 months ago ATpoint ★ 4.6k
2
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0
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730
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Answer: Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
5 months ago ATpoint ★ 4.6k
2
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1
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537
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Answer: Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
5 months ago ATpoint ★ 4.6k
0
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0
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810
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Comment: Comment: DiffBind full library size not reliable
5 months ago ATpoint ★ 4.6k
1
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0
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635
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Comment: Comment: Optimizing CPM Calculation for Varied RNA-seq Data
5 months ago ATpoint ★ 4.6k
0
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2
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810
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Comment: Comment: DiffBind full library size not reliable
6 months ago ATpoint ★ 4.6k
0
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1
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810
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Comment: Comment: DiffBind full library size not reliable
6 months ago ATpoint ★ 4.6k
0
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1
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810
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Comment: Comment: DiffBind full library size not reliable
6 months ago ATpoint ★ 4.6k
0
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0
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599
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Answer: Answer: Validity of SingleR with very small bulk RNAseq reference
6 months ago ATpoint ★ 4.6k
2
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2
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1.6k
views
Answer: Answer: Plot PCA with ellipses using ggplot
6 months ago ATpoint ★ 4.6k
0
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0
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1000
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Comment: Comment: Recount3: PCR duplicates
6 months ago ATpoint ★ 4.6k
0
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0
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628
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Comment: Comment: Error when trying to do different pairwise comparisons and lfcshrink than what's
6 months ago ATpoint ★ 4.6k
0
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1
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628
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Answer: Answer: Error when trying to do different pairwise comparisons and lfcshrink than what's
6 months ago ATpoint ★ 4.6k
0
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0
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640
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Answer: Answer: How to rank DEG for GSEA using DEseq2 result ?
6 months ago ATpoint ★ 4.6k
0
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0
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351
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Answer: Answer: Run DEXSeq successfully but got a result that padj==1 in all genes
6 months ago ATpoint ★ 4.6k
0
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0
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392
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Comment: Comment: output from RAIN doesn't look rhythmic
6 months ago ATpoint ★ 4.6k
0
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0
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318
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Answer: Answer: unreal negative log2fc values
7 months ago ATpoint ★ 4.6k
0
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1
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554
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Comment: Comment: How to search Pubmed Central or other fulltext literature base using regex?
7 months ago ATpoint ★ 4.6k
0
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2
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835
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Comment: Comment: Research Project - Expanding search funtionality on the GEO database
7 months ago ATpoint ★ 4.6k
0
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0
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1.1k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
7 months ago ATpoint ★ 4.6k
1
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0
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436
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Answer: Answer: DESeq2 - vst() - log2FC - no replicates
7 months ago ATpoint ★ 4.6k
0
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0
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970
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Answer: Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
7 months ago ATpoint ★ 4.6k
0
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1
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983
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Comment: Comment: Create multiple DoparParams with different number of registered cores
7 months ago ATpoint ★ 4.6k
2
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6
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983
views
Create multiple DoparParams with different number of registered cores
BiocParallel
updated 7 months ago by 67k • written 7 months ago by ★ 4.6k
0
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1
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983
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Comment: Comment: Create multiple DoparParams with different number of registered cores
7 months ago ATpoint ★ 4.6k
0
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1
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680
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
7 months ago ATpoint ★ 4.6k
0
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1
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680
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Comment: Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
7 months ago ATpoint ★ 4.6k
0
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0
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2.7k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
7 months ago ATpoint ★ 4.6k
0
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0
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563
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Comment: Comment: When I tried to use the functions from the celldex package to fetch information,
7 months ago ATpoint ★ 4.6k
0
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0
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1.8k
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Comment: Comment: Issues with installing Bioconductor packages (eg GEOquery)
7 months ago ATpoint ★ 4.6k
0
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1
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1.8k
views
Answer: Answer: Issues with installing Bioconductor packages (eg GEOquery)
7 months ago ATpoint ★ 4.6k
0
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0
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350
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Answer: Answer: How to access the Bioconductor in Windows
8 months ago ATpoint ★ 4.6k
0
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0
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520
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Comment: Comment: Ploting of normalized counts after batch removal
8 months ago ATpoint ★ 4.6k
1
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0
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527
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Answer: Answer: Deseq2
8 months ago ATpoint ★ 4.6k
0
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0
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1.5k
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Comment: Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
8 months ago ATpoint ★ 4.6k
0
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1
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795
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Comment: Comment: Counter-directional LFC shrinkage
8 months ago ATpoint ★ 4.6k
0
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0
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1.4k
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
8 months ago ATpoint ★ 4.6k
0
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1
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609
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Answer: Answer: Normalisation using clinical traits in RNA seq using DESeq2
8 months ago ATpoint ★ 4.6k
0
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1
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1.4k
views
Answer: Answer: Volcano plot of scRNA-seq data not "centered"
8 months ago ATpoint ★ 4.6k
0
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1
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1.4k
views
Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
8 months ago ATpoint ★ 4.6k
0
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1
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1.4k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
8 months ago ATpoint ★ 4.6k
2
votes
1
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656
views
Answer: Answer: Get gene symbols for a set of hg19 coordinates
8 months ago ATpoint ★ 4.6k
1
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1
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2.9k
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Comment: Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
8 months ago ATpoint ★ 4.6k
1
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0
replies
585
views
Comment: Comment: unable to access bioconductor packages - qvalue installation failed...
8 months ago ATpoint ★ 4.6k
0
votes
1
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734
views
Comment: Comment: Slightly different count plots from R and spreadsheet
8 months ago ATpoint ★ 4.6k
1,016 results • Page 2 of 21
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