Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.1k
views
Answer: Answer: where to download practice data
3.7 years ago ATpoint ★ 4.7k
0
votes
0
replies
1.1k
views
Comment: Comment: How to calculate high and low tumor mutational burden
3.7 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.8k
views
Answer: Answer: Can't install DESeq2 because of libxml
3.7 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.9k
views
Comment: Comment: It takes a so long time to run DESeq2 on 1000 samples
3.7 years ago ATpoint ★ 4.7k
0
votes
0
replies
800
views
Comment: Comment: Technical reps
3.7 years ago ATpoint ★ 4.7k
1
vote
0
replies
2.1k
views
Comment: Comment: Controlling for Batch Effect and Grouping in DESEQ2
3.8 years ago ATpoint ★ 4.7k
0
votes
1
reply
7.0k
views
Comment: Comment: Problems installing DESeq2
3.8 years ago ATpoint ★ 4.7k
1
vote
0
replies
1.8k
views
Comment: Comment: Effect of feature number on adjusted p-values
3.8 years ago ATpoint ★ 4.7k
2
votes
0
replies
2.1k
views
Answer: Answer: how can I annotate my scRNAseq clusters from a Rat experiment?
3.8 years ago ATpoint ★ 4.7k
0
votes
1
reply
2.6k
views
Answer: Answer: Error installing Deseq2
3.8 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.4k
views
Comment: Comment: lmFit, number of proteins
3.8 years ago ATpoint ★ 4.7k
1
vote
0
replies
2.2k
views
Comment: Comment: DESeq2 multiple conditions, time points and sample types
3.8 years ago ATpoint ★ 4.7k
0
votes
1
reply
2.3k
views
Comment: Comment: Number of DEGs with adj pvalue < 0.05
3.8 years ago ATpoint ★ 4.7k
1
vote
0
replies
3.2k
views
Comment: Comment: While trying to remove non differentially expressed genes through limma, I am ge
3.9 years ago ATpoint ★ 4.7k
1
vote
1
reply
3.2k
views
Comment: Comment: While trying to remove non differentially expressed genes through limma, I am ge
3.9 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.4k
views
Answer: Comment: How estimateDisp, glmQLFit and glmQLFTest process my TMM normalized read count m
3.9 years ago ATpoint ★ 4.7k
1
vote
1
reply
1.8k
views
Comment: Comment: GEO + RNA-seq. Total Newbie.
3.9 years ago ATpoint ★ 4.7k
0
votes
0
replies
3.8k
views
Comment: Comment: DESEQ2: Some genes have empty pvalue and padj
3.9 years ago ATpoint ★ 4.7k
0
votes
0
replies
4.1k
views
Comment: Comment: DiffBind how to retrieve normalized count matrix of ATAC-seq data
3.9 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.3k
views
Comment: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
3.9 years ago ATpoint ★ 4.7k
0
votes
0
replies
1.8k
views
Answer: Comment: Comparison when Control is in differen batch
3.9 years ago ATpoint ★ 4.7k
1
vote
1
reply
1.3k
views
Answer: Comment: extracting normalized counts from edgeR for using in GSEA
3.9 years ago ATpoint ★ 4.7k
0
votes
1
reply
4.9k
views
Answer: Comment: How to remove batch effect from RNA-seq without count data?
3.9 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.3k
views
Answer: Comment: How sensitive is DiffBind to Deseq2 assumptions ?
3.9 years ago ATpoint ★ 4.7k
0
votes
0
replies
15k
views
Comment: Comment: Problem install: Package ‘DESeq2’ is not available for this version of R
3.9 years ago ATpoint ★ 4.7k
1
vote
0
replies
1.2k
views
Comment: Comment: Need help in doing network analysis using R
3.9 years ago ATpoint ★ 4.7k
1
vote
1
reply
1.1k
views
Comment: Comment: Error when calculating DE using the classical approach in edgeR
3.9 years ago ATpoint ★ 4.7k
0
votes
2
replies
1.1k
views
Answer: Comment: Error when calculating DE using the classical approach in edgeR
3.9 years ago ATpoint ★ 4.7k
0
votes
0
replies
1.0k
views
Comment: Comment: DESeq2 design formula and batch correction
3.9 years ago ATpoint ★ 4.7k
2
votes
1
reply
3.2k
views
Answer: Comment: fgsea usage question - what gene set to use?
3.9 years ago ATpoint ★ 4.7k
0
votes
0
replies
3.0k
views
Answer: Answer: Biological replicates in DESeq2
4.0 years ago ATpoint ★ 4.7k
1
vote
1
reply
2.4k
views
Comment: Comment: Removing rows (countData) from a DESeq Object
4.0 years ago ATpoint ★ 4.7k
1
vote
1
reply
2.4k
views
Answer: Comment: Removing rows (countData) from a DESeq Object
4.0 years ago ATpoint ★ 4.7k
0
votes
0
replies
1.8k
views
Comment: Comment: Batch correction and DESeq2
4.0 years ago ATpoint ★ 4.7k
0
votes
1
reply
2.0k
views
Comment: Comment: DiffBind analysis for ATAC-Seq error Error processing one or more read files
4.0 years ago ATpoint ★ 4.7k
0
votes
2
replies
11k
views
Answer: Comment: Exporting DESeq2 filtered results
4.0 years ago ATpoint ★ 4.7k
1
vote
0
replies
949
views
Comment: Comment: Identifying differentially expressed genes
4.0 years ago ATpoint ★ 4.7k
1
vote
1
reply
949
views
Comment: Comment: Identifying differentially expressed genes
4.0 years ago ATpoint ★ 4.7k
0
votes
1
reply
2.8k
views
Comment: Comment: why does stat column disappears after lfcshrink on deseq 2 and why does fgsea us
4.0 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.0k
views
Answer: Comment: I can't get the 2 by 2 comparisons that I need because the matrix is not full of
4.0 years ago ATpoint ★ 4.7k
0
votes
0
replies
2.8k
views
Comment: Comment: mgcv not updating
4.0 years ago ATpoint ★ 4.7k
0
votes
0
replies
1.4k
views
Comment: Comment: GTF annotation file for featurecount
4.0 years ago ATpoint ★ 4.7k
1
vote
1
reply
1.3k
views
Comment: Comment: Preprocessing Issue
4.0 years ago ATpoint ★ 4.7k
0
votes
0
replies
4.2k
views
Comment: Comment: Error in (function (classes, fdef, mtable) : unable to find an inherited met
4.0 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.5k
views
Answer: Comment: DSEQ apeglm
4.0 years ago ATpoint ★ 4.7k
2
votes
1
reply
1.5k
views
apeglm -- influence of reference level on logFC and svalues
DESeq2 apeglm
updated 4.0 years ago by 43k • written 4.0 years ago by ★ 4.7k
1
vote
0
replies
2.3k
views
Comment: Comment: Normalisation in DESeq2
4.0 years ago ATpoint ★ 4.7k
2
votes
1
reply
2.3k
views
Answer: Comment: Normalisation in DESeq2
4.0 years ago ATpoint ★ 4.7k
1
vote
0
replies
3.6k
views
Comment: Comment: DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but
4.0 years ago ATpoint ★ 4.7k
0
votes
1
reply
1.4k
views
Comment: Comment: Question: export edgeR normalised OTU table
4.0 years ago ATpoint ★ 4.7k
1,022 results • Page 18 of 21
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6