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Answer: Answer: Can VST be run without runing DESeq or estimateSizeFactors
3.0 years ago ATpoint ★ 4.4k
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814
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Answer: Answer: How similar or disimilar are two sets of DEG?
3.0 years ago ATpoint ★ 4.4k
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Comment: Comment: deseq2 machine sizing best practices for very large data set
3.0 years ago ATpoint ★ 4.4k
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1.8k
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Comment: Comment: deseq2 machine sizing best practices for very large data set
3.0 years ago ATpoint ★ 4.4k
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1
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2.7k
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Answer: Answer: "full model matrix is less than full rank"
3.0 years ago ATpoint ★ 4.4k
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1.5k
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Comment: Comment: error: cannot execute 'f951': execvp: No such file or directory when downloading
3.0 years ago ATpoint ★ 4.4k
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1.1k
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Answer: Answer: Effect size using likelihood ratio test in DESeq2
3.0 years ago ATpoint ★ 4.4k
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2.3k
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Comment: Comment: limma/voom for protein intensity data
3.0 years ago ATpoint ★ 4.4k
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1.6k
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Comment: Comment: small dimensions in the matrix of counts from smallRNA using DESEq2
3.1 years ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expec
3.1 years ago ATpoint ★ 4.4k
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1.3k
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Answer: Answer: DESeq2 design for paired samples
3.1 years ago ATpoint ★ 4.4k
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1.3k
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Comment: Comment: LIMMA - for Microarrays?
3.1 years ago ATpoint ★ 4.4k
2
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8.8k
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Answer: Answer: DESeq2: LRT or WALD guidance
3.1 years ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: DESEQ2 log2FC is not following Normalized read count
3.1 years ago ATpoint ★ 4.4k
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990
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Answer: Answer: How to install "blockwiseModules" in Bioconductor version 3.13
3.1 years ago ATpoint ★ 4.4k
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3.0k
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Answer: Answer: Convert SummarizedExperiment to SingleCellExperiment Object
3.1 years ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: Raw RNA-seq data: column names are sequences
3.1 years ago ATpoint ★ 4.4k
2
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1.1k
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Answer: Answer: Raw RNA-seq data: column names are sequences
3.1 years ago ATpoint ★ 4.4k
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3.6k
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Comment: Comment: How to count barcode sequences in a fastq file
3.1 years ago ATpoint ★ 4.4k
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3.2k
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Comment: Comment: weird MAplot or volcano plot of DESeq2 diff result
3.1 years ago ATpoint ★ 4.4k
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1
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1.4k
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Comment: Comment: DESeq2 paired design
3.1 years ago ATpoint ★ 4.4k
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1.5k
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Comment: Comment: Batch-corrected expression matrix NOT on a log2 scale
3.1 years ago ATpoint ★ 4.4k
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843
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Comment: Comment: identifying trends in RNA-seq data
3.2 years ago ATpoint ★ 4.4k
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843
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Comment: Comment: identifying trends in RNA-seq data
3.2 years ago ATpoint ★ 4.4k
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2.9k
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Comment: Comment: Combat and dds Object
3.2 years ago ATpoint ★ 4.4k
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905
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Comment: Comment: Combining HTSeq and RNA-SeQ for differential analysis
3.2 years ago ATpoint ★ 4.4k
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2
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2.7k
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Comment: Comment: Best practice for quantifying sncRNA
3.2 years ago ATpoint ★ 4.4k
2
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0
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958
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Comment: Comment: P value and Adj. P value showing N/A
3.2 years ago ATpoint ★ 4.4k
1
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1
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934
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Answer: Answer: ChIPQC: log2 or log10?
3.2 years ago ATpoint ★ 4.4k
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1
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1.3k
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Comment: Comment: The P-values with lfcShrink and ashr shrinkage estimator
3.2 years ago ATpoint ★ 4.4k
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1.9k
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Answer: Answer: Unable to install SSPA packages
3.2 years ago ATpoint ★ 4.4k
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0
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723
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Answer: Answer: samples did not decently separate via pcaPlot
3.2 years ago ATpoint ★ 4.4k
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0
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4.1k
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Answer: Answer: Single R-- Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x &&
3.2 years ago ATpoint ★ 4.4k
0
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1
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1.1k
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Comment: Comment: matrix with Salmon gene-level quantifications in DESeq
3.2 years ago ATpoint ★ 4.4k
0
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0
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949
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Comment: Comment: subset a list based on table
3.2 years ago ATpoint ★ 4.4k
1
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1
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949
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Answer: Answer: subset a list based on table
3.2 years ago ATpoint ★ 4.4k
1
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0
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3.7k
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Comment: Comment: Clarification re VST transformed data in DESeq2
3.2 years ago ATpoint ★ 4.4k
1
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1
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3.7k
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Answer: Answer: Clarification re VST transformed data in DESeq2
3.2 years ago ATpoint ★ 4.4k
1
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0
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16k
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Comment: Comment: cannot install edgeR on M1 Mac
3.2 years ago ATpoint ★ 4.4k
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0
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1.0k
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Answer: Answer: DESseq2 question about VST and rlog
3.2 years ago ATpoint ★ 4.4k
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1
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2.1k
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Comment: Comment: bcftools command not found
3.2 years ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: Bias of lowly expressed genes in DESeq2
3.3 years ago ATpoint ★ 4.4k
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2
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1.1k
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Answer: Answer: Bias of lowly expressed genes in DESeq2
3.3 years ago ATpoint ★ 4.4k
0
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2
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992
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Comment: Comment: DESeq2 time course confusion
3.3 years ago ATpoint ★ 4.4k
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1
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992
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Comment: Comment: DESeq2 time course confusion
3.3 years ago ATpoint ★ 4.4k
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0
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5.4k
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Comment: Comment: edgeR calcNormFactors or normalize with voom?
3.3 years ago ATpoint ★ 4.4k
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0
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1.7k
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Answer: Answer: Problem installing packages including flowWorkspace
3.3 years ago ATpoint ★ 4.4k
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1
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1.1k
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Answer: Answer: matrix with Salmon gene-level quantifications in DESeq
3.3 years ago ATpoint ★ 4.4k
0
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1
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6.1k
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Comment: Comment: installing older versions of packages
3.3 years ago ATpoint ★ 4.4k
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0
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918
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Answer: Answer: where to download practice data
3.3 years ago ATpoint ★ 4.4k
971 results • Page 16 of 20
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