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Answer: Answer: DESEq2 erroe
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: Large difference between naive log2 and rlog transformation of count data
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: Large difference between naive log2 and rlog transformation of count data
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: Bioconductor installation problems
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: GSEA many significant gene sets despite no differentially expressed genes
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: Handling of missing values in limma
2.9 years ago ATpoint ★ 4.6k
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Answer: Answer: How to export Slurm to my PATH in Ubuntu 20.04
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: How to install R package from GitHub
2.9 years ago ATpoint ★ 4.6k
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Answer: Answer: Excluding samples as referenced in SummarizedExperiment vignette
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: saving png images and X11
3.0 years ago ATpoint ★ 4.6k
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Comment: Comment: How to determine if limma can adjust for batch effect
3.0 years ago ATpoint ★ 4.6k
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1.2k
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Answer: Answer: Error in findOverlaps function
3.0 years ago ATpoint ★ 4.6k
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Answer: Answer: 95% Confidence intervals for Fold Changes computed by DESeq2
3.0 years ago ATpoint ★ 4.6k
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Comment: Comment: runPCA error / Error in runSVD(x, k = rank, nu = ifelse(get.pcs, rank, 0), nv =
3.0 years ago ATpoint ★ 4.6k
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Comment: Comment: How to get DESeq2 results in large count matix files?
3.0 years ago ATpoint ★ 4.6k
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Comment: Comment: Install DESeq2 problem for macbook pro M1 Max
3.0 years ago ATpoint ★ 4.6k
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Answer: Answer: fgsea not downloading due to new r version. Is there a way around this?
3.0 years ago ATpoint ★ 4.6k
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Comment: Comment: Large DE LogFC range
3.0 years ago ATpoint ★ 4.6k
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Answer: Answer: airway package not compatible with R version 4.1.2 (2021-11-01)
3.1 years ago ATpoint ★ 4.6k
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Comment: Comment: trackviewer gi2track not found
3.1 years ago ATpoint ★ 4.6k
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4.9k
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Comment: Comment: How to remove batch effect from RNA-seq without count data?
3.1 years ago ATpoint ★ 4.6k
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Comment: Comment: DESeq2 median of ratios normalization for signature score calculation
3.1 years ago ATpoint ★ 4.6k
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Comment: Comment: Help with droplevels in Deseq2
3.1 years ago ATpoint ★ 4.6k
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603
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Comment: Comment: Help with installing Biocmanager
3.1 years ago ATpoint ★ 4.6k
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1
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2.3k
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Comment: Comment: DESeq2 analysis for targeted RNA-seq
3.1 years ago ATpoint ★ 4.6k
2
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2.5k
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Answer: Answer: Help with droplevels in Deseq2
3.1 years ago ATpoint ★ 4.6k
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Comment: Comment: Start to End RNA-Seq with R Bioconductor
3.1 years ago ATpoint ★ 4.6k
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Answer: Answer: Ensembl dataset version
3.1 years ago ATpoint ★ 4.6k
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Comment: Comment: RNAseq using galaxy
3.1 years ago ATpoint ★ 4.6k
2
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7.6k
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Answer: Answer: "Paired-end reads were detected in single-end read library"
3.1 years ago ATpoint ★ 4.6k
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1.9k
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Comment: Comment: Can't convert dog ensembl IDs into gene names
3.1 years ago ATpoint ★ 4.6k
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1.5k
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Comment: Comment: velociraptor preparation
3.2 years ago ATpoint ★ 4.6k
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1.9k
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Comment: Comment: deseq2 machine sizing best practices for very large data set
3.2 years ago ATpoint ★ 4.6k
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1.5k
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Comment: Comment: seqinfo got changed after `library(rtracklayer)`
3.2 years ago ATpoint ★ 4.6k
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1.5k
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Comment: Comment: Error with hclust
3.2 years ago ATpoint ★ 4.6k
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1.5k
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Answer: Answer: Error with hclust
3.2 years ago ATpoint ★ 4.6k
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Comment: Comment: deseq2 datasetfrommatrix
3.2 years ago ATpoint ★ 4.6k
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Comment: Comment: Suppress messages from ALL calls to load package
3.2 years ago ATpoint ★ 4.6k
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1.5k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
3.2 years ago ATpoint ★ 4.6k
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1.5k
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Answer: Answer: normalizing EXOM-seq read using DESeq2
3.2 years ago ATpoint ★ 4.6k
1
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2
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1.3k
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biomaRt connection error
biomaRt
updated 3.2 years ago by ★ 6.6k • written 3.2 years ago by ★ 4.6k
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1.1k
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Answer: Answer: WGCA tutorial related question
3.3 years ago ATpoint ★ 4.6k
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Answer: Answer: Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
3.4 years ago ATpoint ★ 4.6k
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Answer: Answer: DESeq2 differential expression analysis of protein coding genes only
3.4 years ago ATpoint ★ 4.6k
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Comment: Comment: spearman correlation
3.4 years ago ATpoint ★ 4.6k
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747
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Answer: Answer: DESeq2 (version 1.10 vs 1.30)
3.4 years ago ATpoint ★ 4.6k
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Answer: Answer: Can VST be run without runing DESeq or estimateSizeFactors
3.4 years ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: How similar or disimilar are two sets of DEG?
3.4 years ago ATpoint ★ 4.6k
1,019 results • Page 16 of 21
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