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Answer: Answer: How to get DESeq2 results for a list of genes
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: setting sizeFactors from scran :: caculateSumFactors.
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: How can i fix this problem in R
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: Use of Scater for QC in scRNA-seq: How to remove cells with less than certain nu
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: Error: DESeq(dds , useT = TRUE, minmu = 1e-06, test = "LRT", : likelih
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: RSEM - tximport; where is effective_length information used? Implications for sc
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: Confused about using RUVg in getting negative control genes using RUVg
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: Different DESeq2 results (both FC and pvalue) by changing col/row orders in inpu
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: lfc Shrinkage with multiple comparison groups
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: Design set up, interaction or group? Two Salinities treatments, Five Populations
2.7 years ago ATpoint ★ 4.6k
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Answer: Answer: Workflow type=Star_counts, I want to download FPKM or TPM values, but star_count
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: Error in DEseq
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: Error in DEseq
2.7 years ago ATpoint ★ 4.6k
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Answer: Answer: Error in DEseq
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: DESeq2 counts error in as.data.frame
2.7 years ago ATpoint ★ 4.6k
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Answer: Answer: Log2FoldChange and normalized count values are not consistent?
2.7 years ago ATpoint ★ 4.6k
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1.2k
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Comment: Comment: How to figure out the FC value from Limma
2.7 years ago ATpoint ★ 4.6k
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Answer: Answer: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: How to figure out the FC value from Limma
2.7 years ago ATpoint ★ 4.6k
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Answer: Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: performing the differential binding in ChIP-seq
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: featureCounts: 0% successfully assigned fragments
2.7 years ago ATpoint ★ 4.6k
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Answer: Answer: The results(dds) function in DESeq2 gives Na values for padj
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: featureCounts: 0% successfully assigned fragments
2.7 years ago ATpoint ★ 4.6k
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Comment: Comment: DESeq2: Extracting Averaged Counts Information from dds and rld
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: DESeq2, Calculate the size factor by using median-of-ratio
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: DESeq2, Calculate the size factor by using median-of-ratio
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: installation of package ‘DESeq2’ had non-zero exit status
2.8 years ago ATpoint ★ 4.6k
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Answer: Answer: installation of package ‘DESeq2’ had non-zero exit status
2.8 years ago ATpoint ★ 4.6k
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Answer: Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
2.8 years ago ATpoint ★ 4.6k
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Answer: Answer: BaseMean and Log2FC values seem weird...
2.8 years ago ATpoint ★ 4.6k
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Answer: Answer: ChIRP-seq peaks and GSEA
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: regionCounts() from csaw - object 'fancy_mseq' not found
2.8 years ago ATpoint ★ 4.6k
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Answer: Answer: Problem with tximport IDs
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: Possible ways to select differential expressed genes using DeSeq2 or edgeR
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: Error in SummarizedExperiment
2.8 years ago ATpoint ★ 4.6k
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Answer: Answer: BaseMean threshold
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: Large difference in PCA plot based on LCPM (log counts per million) and VST (va
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: Large difference in PCA plot based on LCPM (log counts per million) and VST (va
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: Threads on Subread
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: lfcShrink contrast
2.8 years ago ATpoint ★ 4.6k
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Answer: Answer: Why is PhosR not installing?
2.8 years ago ATpoint ★ 4.6k
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Comment: Comment: Seqinr for FASTQ files?
2.9 years ago ATpoint ★ 4.6k
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2.6k
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Comment: Comment: RNA-seq: problems with edgeR installation
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: DESeq2: LRT or WALD guidance
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: DESeq2 Log2 fold change does not make sense given change in TPM
2.9 years ago ATpoint ★ 4.6k
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Comment: Comment: DEseq2 Analysis over multiple tissues and conditions only gives 16 coefficients
2.9 years ago ATpoint ★ 4.6k
1,019 results • Page 15 of 21
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