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Comment: Comment: Getting the normalized counts after running DESeq()
2.4 years ago ATpoint ★ 4.6k
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Answer: Answer: Summary of library size factor is all equal to one
2.4 years ago ATpoint ★ 4.6k
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Answer: Answer: What is the effect of passage number in the differential gene expression when pe
2.4 years ago ATpoint ★ 4.6k
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Answer: Answer: How to design multifactor DESEQ2 formula?
2.4 years ago ATpoint ★ 4.6k
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Comment: Comment: How to add a BioConductor package to a Docker image based on rocker/shiny
2.4 years ago ATpoint ★ 4.6k
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Comment: Comment: getBM Error with certain attribute combinations
2.4 years ago ATpoint ★ 4.6k
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Answer: Answer: Understanding how to contrast two treatments in DESeq2
2.4 years ago ATpoint ★ 4.6k
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Comment: Comment: output file conversion from FeatureCount to DESeq2 - no duplicate for samples
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: resultsNames(dds) not showing all contrasts
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: DESEq2 rerun gives different results
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: HTSeq command option for single-end reads
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: HTSeq command option for single-end reads
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: how to plot the union of the 100 most expressed genes
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: HTSeq command option for single-end reads
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: using of z score in Differentially Expression Analysis
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: using of z score in Differentially Expression Analysis
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: DESeq2 on normalized data
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: TPM normalization starting with read counts
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: Adding custom transcript to Salmon index
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: Change my bedgraph file to wig in R
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: Issues installing DESeq2 package with R version 4.2.1
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: Issues installing DESeq2 package with R version 4.2.1
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: Detection of reference genes by Deseq2
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: Which is the best type of data for correlation or survival analysis
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: MEDIPS for chIP-Seq
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: Handling heterogeneous data in DESeq2: multiple covariates to control against
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: batch effect
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: batch effect
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: SingleCellExperiment: Edit cluster IDs in colLabels
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: Error in running: classifySingleR from SingleR package
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: Convert an R data.frame to a bed file in R
2.5 years ago ATpoint ★ 4.6k
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578
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Comment: Comment: MAAPER
2.5 years ago ATpoint ★ 4.6k
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Answer: Answer: Subsetting a DESeq object - gene-wise dispersions
2.5 years ago ATpoint ★ 4.6k
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Comment: Comment: Convert an R data.frame to a bed file in R
2.5 years ago ATpoint ★ 4.6k
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1.9k
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Answer: Answer: DESeq2 aggregated single cell data
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: DESeq2 - transcript length correction necessary when quantifying reads from ends
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: Help with featureCounts
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: Quality control of scRNA-seq data using mitochondrial ratio (drosophila)
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: Remove unwanted variation/confounder due to library size with sva
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: DeSeq2 Matched Analysis
2.6 years ago ATpoint ★ 4.6k
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1.3k
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Answer: Answer: DESeq2 analysis has not been run for this contrast
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: proteomics analysis
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: proteomics analysis
2.6 years ago ATpoint ★ 4.6k
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Answer: Answer: Iterating over a column within colData@listData
2.6 years ago ATpoint ★ 4.6k
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Comment: Comment: calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMet
2.6 years ago ATpoint ★ 4.6k
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4.2k
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Comment: Comment: How to get DESeq2 results for a list of genes
2.6 years ago ATpoint ★ 4.6k
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1.6k
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Comment: Comment: Error while running DESeq2
2.6 years ago ATpoint ★ 4.6k
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4.2k
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Comment: Comment: How to get DESeq2 results for a list of genes
2.6 years ago ATpoint ★ 4.6k
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0
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699
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Answer: Answer: Error
2.6 years ago ATpoint ★ 4.6k
1,019 results • Page 14 of 21
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