Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
4.0k
views
Answer: Answer: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
2.2 years ago ATpoint ★ 4.6k
1
vote
0
replies
1.0k
views
Comment: Comment: SingleR using TPM in a bulk RNA seq dataset
2.3 years ago ATpoint ★ 4.6k
2
votes
1
reply
8.6k
views
Comment: Comment: Install DESeq2 problem for macbook pro M1 Max
2.3 years ago ATpoint ★ 4.6k
1
vote
1
reply
2.0k
views
Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
2.1k
views
Comment: Comment: How to extract all comparison in DESeq2 LRT test
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
2.1k
views
Comment: Comment: How to extract all comparison in DESeq2 LRT test
2.3 years ago ATpoint ★ 4.6k
0
votes
0
replies
1.0k
views
Answer: Answer: Limit the number of nodes in DESeq2
2.3 years ago ATpoint ★ 4.6k
0
votes
0
replies
1.8k
views
Comment: Comment: HOMER error: Where is the file?
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
828
views
Comment: Comment: limma manual typo
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
1.9k
views
Answer: Answer: Differential Expression Analysis on RNAseq - RSEM expected_count from UCSC RNA-S
2.3 years ago ATpoint ★ 4.6k
1
vote
0
replies
3.1k
views
Comment: Comment: t.test to determine the P-value in DESeq2
2.3 years ago ATpoint ★ 4.6k
1
vote
0
replies
910
views
Answer: Answer: What should I do with RNA-Seq data to get a gene that work?
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
3.1k
views
Comment: Comment: t.test to determine the P-value in DESeq2
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
910
views
Comment: Comment: What should I do with RNA-Seq data to get a gene that work?
2.3 years ago ATpoint ★ 4.6k
1
vote
0
replies
1.2k
views
Comment: Comment: Design formula with batch effects DESeq2 "Not full rank matrix" error.
2.3 years ago ATpoint ★ 4.6k
2
votes
0
replies
735
views
Answer: Answer: Should I set a seed prior to running AUCell?
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
3.1k
views
Comment: Comment: t.test to determine the P-value in DESeq2
2.3 years ago ATpoint ★ 4.6k
2
votes
1
reply
3.1k
views
Answer: Answer: t.test to determine the P-value in DESeq2
2.3 years ago ATpoint ★ 4.6k
0
votes
0
replies
2.1k
views
Comment: Comment: Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
2.1k
views
Answer: Answer: Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
2.3 years ago ATpoint ★ 4.6k
1
vote
0
replies
2.4k
views
Comment: Comment: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
2.3 years ago ATpoint ★ 4.6k
2
votes
1
reply
1.8k
views
Answer: Answer: How to convert transcript counts to gene counts in R?
2.3 years ago ATpoint ★ 4.6k
0
votes
0
replies
895
views
Answer: Answer: DESeq2 - Differential expression for miRNA data
2.3 years ago ATpoint ★ 4.6k
2
votes
1
reply
1.1k
views
Answer: Answer: featureCounts: No effect of setting -d and -D?
2.3 years ago ATpoint ★ 4.6k
3
votes
1
reply
1.4k
views
Answer: Answer: What is the correct way to import transcript abundances from 3' Quantseq results
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
1.5k
views
Answer: Answer: Skew of differentially expressed genes using DESeq2
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
1.2k
views
Comment: Comment: DESeq2 for ribo-IP analysis
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
1.2k
views
Answer: Answer: DESeq2 for ribo-IP analysis
2.3 years ago ATpoint ★ 4.6k
0
votes
1
reply
1.0k
views
Comment: Comment: multiple correction on mean of TPM
2.3 years ago ATpoint ★ 4.6k
1
vote
1
reply
1.2k
views
Answer: Answer: Combine scRNAseq data for bulk analysis using DESeq2
2.3 years ago ATpoint ★ 4.6k
1
vote
1
reply
1.6k
views
Comment: Comment: I have problems installing DESeq2 using R4.1.2. It tells me that it is not avail
2.4 years ago ATpoint ★ 4.6k
2
votes
0
replies
2.5k
views
Answer: Answer: Removing metadata rows containing NA values in GRanges
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
3.1k
views
Answer: Answer: Properly constructing a hypergeometric test
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
688
views
Answer: Answer: Extracting multi-design adjusted counts on DESeq2
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
2.0k
views
Comment: Comment: merge TPM values for same geneID
2.4 years ago ATpoint ★ 4.6k
0
votes
1
reply
2.0k
views
Answer: Answer: merge TPM values for same geneID
2.4 years ago ATpoint ★ 4.6k
0
votes
1
reply
2.4k
views
Comment: Comment: No differentially expressed genes after DESeq
2.4 years ago ATpoint ★ 4.6k
1
vote
1
reply
1.6k
views
Comment: Comment: DESEQ2 several samples per individual
2.4 years ago ATpoint ★ 4.6k
1
vote
1
reply
1.6k
views
Answer: Answer: DESEQ2 several samples per individual
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
478
views
Answer: Answer: Bioconductor Rpackages install
2.4 years ago ATpoint ★ 4.6k
1
vote
0
replies
2.0k
views
Comment: Comment: difference between txi$counts and txi$abundance when countsFromAbundance is true
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
982
views
Comment: Comment: Confused about design for RNA seq experiment
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
999
views
Answer: Answer: tcga expression data
2.4 years ago ATpoint ★ 4.6k
1
vote
0
replies
1.1k
views
Answer: Answer: Gene abundance DESEq
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
5.7k
views
Comment: Comment: BaseMean threshold
2.4 years ago ATpoint ★ 4.6k
0
votes
1
reply
5.7k
views
Comment: Comment: BaseMean threshold
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
1.3k
views
Comment: Comment: rtacklayer::import.bed silently adds 1 to the start coordinates
2.4 years ago ATpoint ★ 4.6k
2
votes
0
replies
2.8k
views
Answer: Answer: Understanding tximport working with salmon outputs
2.4 years ago ATpoint ★ 4.6k
0
votes
0
replies
4.2k
views
Comment: Comment: Getting the normalized counts after running DESeq()
2.4 years ago ATpoint ★ 4.6k
1
vote
1
reply
1.2k
views
Answer: Answer: Summary of library size factor is all equal to one
2.4 years ago ATpoint ★ 4.6k
1,017 results • Page 13 of 21
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6