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Comment: Comment: How to normalize long-read RNA-seq data for comparison with short-reads
2.0 years ago ATpoint ★ 4.6k
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Answer: Answer: DESeq2 in R 4.2.2
2.0 years ago ATpoint ★ 4.6k
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Comment: Comment: convert local downloaded bigwig files to .bed files
2.0 years ago ATpoint ★ 4.6k
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1.1k
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Comment: Comment: trying to generate an object from a virtual class ("DataFrame")
2.0 years ago ATpoint ★ 4.6k
2
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930
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Answer: Answer: [DESeq2] There is no difference in expression in my heatmap
2.1 years ago ATpoint ★ 4.6k
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980
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Answer: Answer: RUV with K more than 1.
2.1 years ago ATpoint ★ 4.6k
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3.4k
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Comment: Comment: Combat and dds Object
2.1 years ago ATpoint ★ 4.6k
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389
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Answer: Answer: More information on results columns
2.1 years ago ATpoint ★ 4.6k
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750
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Answer: Answer: How to find degraded genes but unaffected by condition in a time course RNAseq e
2.1 years ago ATpoint ★ 4.6k
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Comment: Comment: Do the count values should be only integer to be able to use DESeq2?
2.1 years ago ATpoint ★ 4.6k
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579
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Answer: Answer: Differential RNA seq on TCGA set
2.1 years ago ATpoint ★ 4.6k
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944
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Comment: Comment: mmc57bl6nj_gene_ensembl biomaRt
2.1 years ago ATpoint ★ 4.6k
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647
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Answer: Answer: Differential expression between samples of the same group
2.1 years ago ATpoint ★ 4.6k
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1.2k
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Answer: Answer: Missing transcript
2.1 years ago ATpoint ★ 4.6k
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713
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Comment: Comment: Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
2.1 years ago ATpoint ★ 4.6k
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866
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Answer: Answer: Using the standard deviation of DESeq rlog transformed counts to identify genes
2.1 years ago ATpoint ★ 4.6k
1
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1
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944
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Answer: Answer: mmc57bl6nj_gene_ensembl biomaRt
2.1 years ago ATpoint ★ 4.6k
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1
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1.8k
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Comment: Comment: How to search a .narrowPeak file for a list of specific genes using GenomicRange
2.1 years ago ATpoint ★ 4.6k
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0
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648
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Answer: Answer: DEseq2 for time series analysis of data that are already notmalized
2.1 years ago ATpoint ★ 4.6k
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647
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Answer: Answer: Time series RNA-seq without conditions
2.1 years ago ATpoint ★ 4.6k
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Answer: Answer: Confused about tximport-DESeq2 setup
2.1 years ago ATpoint ★ 4.6k
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942
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Comment: Comment: Celfiles not reading in
2.1 years ago ATpoint ★ 4.6k
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6.7k
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Comment: Comment: Manually calculating log2 fold change values from DESeq2 normalized counts
2.1 years ago ATpoint ★ 4.6k
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1
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2.8k
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Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
2.1 years ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: suggest to report differential count estimate in DESeq2
2.1 years ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: low counts from microRNA seq
2.1 years ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: low counts from microRNA seq
2.1 years ago ATpoint ★ 4.6k
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1
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1.3k
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Answer: Answer: low counts from microRNA seq
2.1 years ago ATpoint ★ 4.6k
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743
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Comment: Comment: I need help with EdgeR!
2.2 years ago ATpoint ★ 4.6k
2
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1
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919
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limma: R-squared for time-series data
limma
updated 2.2 years ago by 52k • written 2.2 years ago by ★ 4.6k
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783
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Answer: Answer: Using DESeq2 for time-series analysis with two conditions
2.2 years ago ATpoint ★ 4.6k
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1.9k
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Comment: Comment: Unusual MA and volcano plots?
2.2 years ago ATpoint ★ 4.6k
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1.9k
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Answer: Answer: Unusual MA and volcano plots?
2.2 years ago ATpoint ★ 4.6k
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1.0k
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Comment: Comment: Results analysis of differential gene expression using DESeq2 package
2.2 years ago ATpoint ★ 4.6k
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830
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Answer: Answer: Does the knock down cause transcriptome-wide differences in isoform usage for Pa
2.2 years ago ATpoint ★ 4.6k
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880
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Comment: Comment: TCGA RNAseq Normalization
2.2 years ago ATpoint ★ 4.6k
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0
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1.3k
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Comment: Comment: Deseq2 and co-expression network normalization
2.2 years ago ATpoint ★ 4.6k
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0
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1.3k
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Answer: Answer: unable to load edgeR after installing it
2.2 years ago ATpoint ★ 4.6k
1
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1
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1.2k
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Answer: Answer: Changing the sample order in the PCA plot
2.2 years ago ATpoint ★ 4.6k
1
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1
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1.0k
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Comment: Comment: Older source of biocFileCache package
2.2 years ago ATpoint ★ 4.6k
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1
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1.5k
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Answer: Answer: Problem with DESeq2
2.2 years ago ATpoint ★ 4.6k
1
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0
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2.9k
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Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
2.2 years ago ATpoint ★ 4.6k
2
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1
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2.9k
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Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
2.2 years ago ATpoint ★ 4.6k
1
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0
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2.2k
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Comment: Comment: Instaling glmGamPoi
2.2 years ago ATpoint ★ 4.6k
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1.8k
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Comment: Comment: Too many differentially expressed miRNA with limma
2.2 years ago ATpoint ★ 4.6k
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1.2k
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Answer: Answer: ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
2.2 years ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: Error loading package MSnbase on MacOS
2.2 years ago ATpoint ★ 4.6k
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4.0k
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Comment: Comment: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
2.2 years ago ATpoint ★ 4.6k
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1.2k
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Answer: Answer: Trouble with importing transcript counts with Salmon
2.2 years ago ATpoint ★ 4.6k
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4.0k
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Comment: Comment: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
2.2 years ago ATpoint ★ 4.6k
1,017 results • Page 12 of 21
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