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Comment: Comment: Error loading package MSnbase on MacOS
22 months ago ATpoint ★ 4.4k
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Comment: Comment: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
22 months ago ATpoint ★ 4.4k
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1.1k
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Answer: Answer: Trouble with importing transcript counts with Salmon
22 months ago ATpoint ★ 4.4k
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3.3k
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Comment: Comment: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
22 months ago ATpoint ★ 4.4k
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3.3k
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Answer: Answer: Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts ma
22 months ago ATpoint ★ 4.4k
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890
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Comment: Comment: SingleR using TPM in a bulk RNA seq dataset
22 months ago ATpoint ★ 4.4k
2
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8.2k
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Comment: Comment: Install DESeq2 problem for macbook pro M1 Max
22 months ago ATpoint ★ 4.4k
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1
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1.7k
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Comment: Comment: why there are read counts in the gene knock out rat RNA-seq data
23 months ago ATpoint ★ 4.4k
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1.9k
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Comment: Comment: How to extract all comparison in DESeq2 LRT test
23 months ago ATpoint ★ 4.4k
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1.9k
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Comment: Comment: How to extract all comparison in DESeq2 LRT test
23 months ago ATpoint ★ 4.4k
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865
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Answer: Answer: Limit the number of nodes in DESeq2
23 months ago ATpoint ★ 4.4k
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1.6k
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Comment: Comment: HOMER error: Where is the file?
23 months ago ATpoint ★ 4.4k
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750
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Comment: Comment: limma manual typo
23 months ago ATpoint ★ 4.4k
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Answer: Answer: Differential Expression Analysis on RNAseq - RSEM expected_count from UCSC RNA-S
23 months ago ATpoint ★ 4.4k
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2.7k
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Comment: Comment: t.test to determine the P-value in DESeq2
23 months ago ATpoint ★ 4.4k
1
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818
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Answer: Answer: What should I do with RNA-Seq data to get a gene that work?
23 months ago ATpoint ★ 4.4k
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2.7k
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Comment: Comment: t.test to determine the P-value in DESeq2
23 months ago ATpoint ★ 4.4k
0
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1
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818
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Comment: Comment: What should I do with RNA-Seq data to get a gene that work?
23 months ago ATpoint ★ 4.4k
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Comment: Comment: Design formula with batch effects DESeq2 "Not full rank matrix" error.
23 months ago ATpoint ★ 4.4k
2
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619
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Answer: Answer: Should I set a seed prior to running AUCell?
23 months ago ATpoint ★ 4.4k
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1
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2.7k
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Comment: Comment: t.test to determine the P-value in DESeq2
23 months ago ATpoint ★ 4.4k
2
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1
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2.7k
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Answer: Answer: t.test to determine the P-value in DESeq2
23 months ago ATpoint ★ 4.4k
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1.9k
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Comment: Comment: Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
23 months ago ATpoint ★ 4.4k
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1
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1.9k
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Answer: Answer: Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
23 months ago ATpoint ★ 4.4k
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2.0k
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Comment: Comment: Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names' are not al
23 months ago ATpoint ★ 4.4k
2
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1.6k
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Answer: Answer: How to convert transcript counts to gene counts in R?
23 months ago ATpoint ★ 4.4k
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0
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808
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Answer: Answer: DESeq2 - Differential expression for miRNA data
23 months ago ATpoint ★ 4.4k
2
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942
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Answer: Answer: featureCounts: No effect of setting -d and -D?
23 months ago ATpoint ★ 4.4k
3
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1.2k
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Answer: Answer: What is the correct way to import transcript abundances from 3' Quantseq results
23 months ago ATpoint ★ 4.4k
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1.4k
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Answer: Answer: Skew of differentially expressed genes using DESeq2
23 months ago ATpoint ★ 4.4k
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1
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1.1k
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Comment: Comment: DESeq2 for ribo-IP analysis
23 months ago ATpoint ★ 4.4k
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1
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1.1k
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Answer: Answer: DESeq2 for ribo-IP analysis
23 months ago ATpoint ★ 4.4k
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1
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931
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Comment: Comment: multiple correction on mean of TPM
23 months ago ATpoint ★ 4.4k
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1.1k
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Answer: Answer: Combine scRNAseq data for bulk analysis using DESeq2
23 months ago ATpoint ★ 4.4k
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1
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1.5k
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Comment: Comment: I have problems installing DESeq2 using R4.1.2. It tells me that it is not avail
24 months ago ATpoint ★ 4.4k
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2.2k
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Answer: Answer: Removing metadata rows containing NA values in GRanges
24 months ago ATpoint ★ 4.4k
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2.5k
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Answer: Answer: Properly constructing a hypergeometric test
24 months ago ATpoint ★ 4.4k
0
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621
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Answer: Answer: Extracting multi-design adjusted counts on DESeq2
24 months ago ATpoint ★ 4.4k
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1.7k
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Comment: Comment: merge TPM values for same geneID
2.0 years ago ATpoint ★ 4.4k
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1
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1.7k
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Answer: Answer: merge TPM values for same geneID
2.0 years ago ATpoint ★ 4.4k
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1
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2.0k
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Comment: Comment: No differentially expressed genes after DESeq
2.0 years ago ATpoint ★ 4.4k
1
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1
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1.3k
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Comment: Comment: DESEQ2 several samples per individual
2.0 years ago ATpoint ★ 4.4k
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1
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1.3k
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Answer: Answer: DESEQ2 several samples per individual
2.0 years ago ATpoint ★ 4.4k
0
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435
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Answer: Answer: Bioconductor Rpackages install
2.0 years ago ATpoint ★ 4.4k
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0
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1.6k
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Comment: Comment: difference between txi$counts and txi$abundance when countsFromAbundance is true
2.0 years ago ATpoint ★ 4.4k
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873
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Comment: Comment: Confused about design for RNA seq experiment
2.0 years ago ATpoint ★ 4.4k
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892
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Answer: Answer: tcga expression data
2.0 years ago ATpoint ★ 4.4k
1
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0
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965
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Answer: Answer: Gene abundance DESEq
2.0 years ago ATpoint ★ 4.4k
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4.8k
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Comment: Comment: BaseMean threshold
2.0 years ago ATpoint ★ 4.4k
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1
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4.8k
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Comment: Comment: BaseMean threshold
2.0 years ago ATpoint ★ 4.4k
971 results • Page 12 of 20
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