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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
2.0 years ago ATpoint ★ 4.8k
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2.3k
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Answer: Answer: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
2.0 years ago ATpoint ★ 4.8k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: RNA-seq analysis without replicates
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: DESeq
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Comment: Comment: BiomaRt: problems annotating a list of DEGs from DESeq2
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: How to import dataset from other software into DESeq2?
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: Error with regionCounts()
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Error with regionCounts()
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: How to get around the warning message: mzR has been built against a different Rc
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: Scaling and normalization by deconvolution of SMART-Seq 2 data
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: ggplot and geom_lines for clustering
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: How to combine two DESeq2 objects (dds) for analysis
2.1 years ago ATpoint ★ 4.8k
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2.4k
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Comment: Comment: how can I do gene differential analysis on data after vst
2.1 years ago ATpoint ★ 4.8k
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2.4k
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Answer: Answer: how can I do gene differential analysis on data after vst
2.1 years ago ATpoint ★ 4.8k
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1.3k
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Comment: Comment: limma with or without intercept gives different results
2.1 years ago ATpoint ★ 4.8k
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3.2k
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Comment: Comment: deseq2 normalization and statistical method
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: HISAT2 mapping
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: Multifactorial Design for DESEQ2
2.1 years ago ATpoint ★ 4.8k
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903
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Comment: Comment: Doubt about expression data as well as assay
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: deseq2 normalization and statistical method
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: Batch correction and Deseq2
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Are polynomial contrasts for a time factor possible in DESeq2?
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: How to change the dot size in plotPCA?
2.1 years ago ATpoint ★ 4.8k
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1.9k
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Answer: Answer: DESeqDataSetFromMatrix NA values
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: How to compute(calculate) rlog and vst provided from DESeq2
2.1 years ago ATpoint ★ 4.8k
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662
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Answer: Answer: Outlier removal outcome
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: deseq2 RLE normalization
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Using DESeq2 only for normalization
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: hill-shaped p-value distributions using EdgeR
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: different number of DEG because of outliers
updated 2.1 years ago by 43k • written 2.1 years ago by ★ 4.8k
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Answer: Answer: different number of DEG because of outliers
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
2.1 years ago ATpoint ★ 4.8k
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661
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Answer: Answer: processing samples with significantly different counts
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: DESeq Normalization and miRNAs Filtering
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: Does the running time of DESeq function is much more longer for design factor co
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: Horizontal integration of two RNA-seq datasets derived from two different platfo
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Batch correction and Deseq2
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: SingleR and gcc-8.3.0
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Heatmap of two conditions from the normalized gene count data
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Which samples to remove from analysis based on Cook's distance outliers plot
2.1 years ago ATpoint ★ 4.8k
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Comment: Comment: DESeq2 for another layer of differential analysis
2.1 years ago ATpoint ★ 4.8k
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Answer: Answer: Normalization of RNA seq data before DESeq2 and PCA in case of strong batch effe
2.1 years ago ATpoint ★ 4.8k
1,056 results • Page 11 of 22
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