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Answer: Answer: Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
23 months ago ATpoint ★ 4.6k
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959
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Comment: Comment: Does the running time of DESeq function is much more longer for design factor co
23 months ago ATpoint ★ 4.6k
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Comment: Comment: Horizontal integration of two RNA-seq datasets derived from two different platfo
23 months ago ATpoint ★ 4.6k
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1.4k
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Answer: Answer: Batch correction and Deseq2
23 months ago ATpoint ★ 4.6k
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1.9k
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Comment: Comment: SingleR and gcc-8.3.0
23 months ago ATpoint ★ 4.6k
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926
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Answer: Answer: Heatmap of two conditions from the normalized gene count data
23 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: Which samples to remove from analysis based on Cook's distance outliers plot
23 months ago ATpoint ★ 4.6k
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675
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Comment: Comment: DESeq2 for another layer of differential analysis
23 months ago ATpoint ★ 4.6k
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825
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Answer: Answer: Normalization of RNA seq data before DESeq2 and PCA in case of strong batch effe
23 months ago ATpoint ★ 4.6k
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1.2k
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Answer: Answer: Batch question Bulk RNA-Seq
23 months ago ATpoint ★ 4.6k
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2.4k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
23 months ago ATpoint ★ 4.6k
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1.4k
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Comment: Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
23 months ago ATpoint ★ 4.6k
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1.8k
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Comment: Comment: Knee and Inflection of DropletUtils
23 months ago ATpoint ★ 4.6k
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820
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Answer: Answer: Subsetting DESeq when different cell types
23 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: PCA subset of genes vs DE
23 months ago ATpoint ★ 4.6k
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1.2k
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Comment: Comment: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
23 months ago ATpoint ★ 4.6k
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1.8k
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Comment: Comment: Knee and Inflection of DropletUtils
23 months ago ATpoint ★ 4.6k
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1.7k
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Answer: Answer: package ‘GenomeInfoDb’ could not be loaded
23 months ago ATpoint ★ 4.6k
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3.6k
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Answer: Answer: bwa mem2 index genome - chipseq analysis
23 months ago ATpoint ★ 4.6k
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1.3k
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Answer: Answer: Deseq2: Technical replicates for differential expression analysis
23 months ago ATpoint ★ 4.6k
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2.6k
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Answer: Answer: DESeq2 design after combatseq batch correction
23 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: What is cpmByGroup used for?
23 months ago ATpoint ★ 4.6k
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1.0k
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Comment: Comment: Only getting 10 peaks from mac2 callpeak
23 months ago ATpoint ★ 4.6k
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1.1k
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Answer: Answer: Installation of R-packages for RNA-seq analysis
24 months ago ATpoint ★ 4.6k
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657
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Comment: Comment: Rbam and Rqc files error
24 months ago ATpoint ★ 4.6k
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589
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Comment: Comment: Log of Step 1
24 months ago ATpoint ★ 4.6k
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650
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Comment: Comment: maxfragmentsize problem
24 months ago ATpoint ★ 4.6k
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1.3k
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Answer: Answer: Query regarding error in installation of "microbiomeutilities" R package
24 months ago ATpoint ★ 4.6k
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3
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3.9k
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Answer: Answer: Understanding "gene ratio" when using plotEnrich(c())
24 months ago ATpoint ★ 4.6k
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1.4k
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Answer: Answer: combining multiple salmon runs after tximport
24 months ago ATpoint ★ 4.6k
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1.5k
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Answer: Answer: Why is my log fold change not centered around 0 and lower?
24 months ago ATpoint ★ 4.6k
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0
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3.9k
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Answer: Answer: DESeq2 after Seurat analysis on integrated datasets
24 months ago ATpoint ★ 4.6k
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0
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768
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Answer: Answer: logFoldChange results in inverted comparison
24 months ago ATpoint ★ 4.6k
1
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0
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2.5k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
24 months ago ATpoint ★ 4.6k
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2.3k
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Answer: Answer: Input for MAST
24 months ago ATpoint ★ 4.6k
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1
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880
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Answer: Answer: Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
24 months ago ATpoint ★ 4.6k
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2
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714
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Answer: Answer: Differences in sample size between conditions - pairwise comparison
24 months ago ATpoint ★ 4.6k
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3.4k
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Answer: Answer: Conducting pair-wise comparison in DESeq2?
24 months ago ATpoint ★ 4.6k
2
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1.2k
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Answer: Answer: Updating DESeq2 object's design with sva output
24 months ago ATpoint ★ 4.6k
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698
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Answer: Answer: Does DESeq2 work for investigating the gene differential expression before and a
2.0 years ago ATpoint ★ 4.6k
1
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1
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3.9k
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Answer: Answer: DESeq2::plotPCA()
2.0 years ago ATpoint ★ 4.6k
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1
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1.2k
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Answer: Answer: Error with FindConservedMarkers()
2.0 years ago ATpoint ★ 4.6k
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0
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783
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Answer: Answer: How to add pvalue to boxplot?
2.0 years ago ATpoint ★ 4.6k
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0
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963
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Answer: Answer: struggling to create a heatmap
2.0 years ago ATpoint ★ 4.6k
2
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0
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3.2k
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Comment: Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
2.0 years ago ATpoint ★ 4.6k
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1.7k
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Answer: Answer: Which genes are outliers in DESeq2?
2.0 years ago ATpoint ★ 4.6k
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3.4k
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Comment: Comment: Combat and dds Object
2.0 years ago ATpoint ★ 4.6k
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3.5k
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Answer: Answer: batch effect correction before DESeq2 analysis
2.0 years ago ATpoint ★ 4.6k
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1
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779
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Answer: Answer: find tandem repeats in DNA
2.0 years ago ATpoint ★ 4.6k
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0
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1.7k
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Answer: Answer: on which data type limma::removeBatchEffect can be applyed?
2.0 years ago ATpoint ★ 4.6k
1,017 results • Page 11 of 21
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