Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.9k
views
Comment: Comment: Combat and dds Object
20 months ago ATpoint ★ 4.4k
1
vote
0
replies
2.6k
views
Answer: Answer: batch effect correction before DESeq2 analysis
20 months ago ATpoint ★ 4.4k
0
votes
1
reply
657
views
Answer: Answer: find tandem repeats in DNA
20 months ago ATpoint ★ 4.4k
1
vote
0
replies
1.5k
views
Answer: Answer: on which data type limma::removeBatchEffect can be applyed?
20 months ago ATpoint ★ 4.4k
1
vote
1
reply
2.8k
views
Comment: Comment: How to normalize long-read RNA-seq data for comparison with short-reads
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
2.3k
views
Answer: Answer: DESeq2 in R 4.2.2
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.8k
views
Comment: Comment: convert local downloaded bigwig files to .bed files
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
984
views
Comment: Comment: trying to generate an object from a virtual class ("DataFrame")
20 months ago ATpoint ★ 4.4k
2
votes
1
reply
815
views
Answer: Answer: [DESeq2] There is no difference in expression in my heatmap
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
857
views
Answer: Answer: RUV with K more than 1.
20 months ago ATpoint ★ 4.4k
1
vote
1
reply
2.9k
views
Comment: Comment: Combat and dds Object
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
341
views
Answer: Answer: More information on results columns
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
657
views
Answer: Answer: How to find degraded genes but unaffected by condition in a time course RNAseq e
20 months ago ATpoint ★ 4.4k
1
vote
1
reply
2.4k
views
Comment: Comment: Do the count values should be only integer to be able to use DESeq2?
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
522
views
Answer: Answer: Differential RNA seq on TCGA set
20 months ago ATpoint ★ 4.4k
0
votes
1
reply
838
views
Comment: Comment: mmc57bl6nj_gene_ensembl biomaRt
20 months ago ATpoint ★ 4.4k
0
votes
1
reply
587
views
Answer: Answer: Differential expression between samples of the same group
20 months ago ATpoint ★ 4.4k
0
votes
0
replies
982
views
Answer: Answer: Missing transcript
21 months ago ATpoint ★ 4.4k
0
votes
0
replies
600
views
Comment: Comment: Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
21 months ago ATpoint ★ 4.4k
1
vote
0
replies
772
views
Answer: Answer: Using the standard deviation of DESeq rlog transformed counts to identify genes
21 months ago ATpoint ★ 4.4k
1
vote
1
reply
838
views
Answer: Answer: mmc57bl6nj_gene_ensembl biomaRt
21 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.5k
views
Comment: Comment: How to search a .narrowPeak file for a list of specific genes using GenomicRange
21 months ago ATpoint ★ 4.4k
1
vote
0
replies
551
views
Answer: Answer: DEseq2 for time series analysis of data that are already notmalized
21 months ago ATpoint ★ 4.4k
1
vote
0
replies
564
views
Answer: Answer: Time series RNA-seq without conditions
21 months ago ATpoint ★ 4.4k
2
votes
0
replies
906
views
Answer: Answer: Confused about tximport-DESeq2 setup
21 months ago ATpoint ★ 4.4k
0
votes
0
replies
850
views
Comment: Comment: Celfiles not reading in
21 months ago ATpoint ★ 4.4k
0
votes
0
replies
5.3k
views
Comment: Comment: Manually calculating log2 fold change values from DESeq2 normalized counts
21 months ago ATpoint ★ 4.4k
0
votes
1
reply
2.6k
views
Comment: Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2
21 months ago ATpoint ★ 4.4k
0
votes
1
reply
968
views
Answer: Answer: suggest to report differential count estimate in DESeq2
21 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.2k
views
Comment: Comment: low counts from microRNA seq
21 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.2k
views
Comment: Comment: low counts from microRNA seq
21 months ago ATpoint ★ 4.4k
1
vote
1
reply
1.2k
views
Answer: Answer: low counts from microRNA seq
21 months ago ATpoint ★ 4.4k
0
votes
0
replies
681
views
Comment: Comment: I need help with EdgeR!
21 months ago ATpoint ★ 4.4k
2
votes
1
reply
792
views
limma: R-squared for time-series data
limma
updated 21 months ago by 51k • written 21 months ago by ★ 4.4k
0
votes
0
replies
694
views
Answer: Answer: Using DESeq2 for time-series analysis with two conditions
21 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.7k
views
Comment: Comment: Unusual MA and volcano plots?
21 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.7k
views
Answer: Answer: Unusual MA and volcano plots?
21 months ago ATpoint ★ 4.4k
0
votes
0
replies
887
views
Comment: Comment: Results analysis of differential gene expression using DESeq2 package
21 months ago ATpoint ★ 4.4k
0
votes
0
replies
737
views
Answer: Answer: Does the knock down cause transcriptome-wide differences in isoform usage for Pa
22 months ago ATpoint ★ 4.4k
0
votes
0
replies
761
views
Comment: Comment: TCGA RNAseq Normalization
22 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.2k
views
Comment: Comment: Deseq2 and co-expression network normalization
22 months ago ATpoint ★ 4.4k
0
votes
0
replies
1.2k
views
Answer: Answer: unable to load edgeR after installing it
22 months ago ATpoint ★ 4.4k
1
vote
1
reply
1.1k
views
Answer: Answer: Changing the sample order in the PCA plot
22 months ago ATpoint ★ 4.4k
1
vote
1
reply
902
views
Comment: Comment: Older source of biocFileCache package
22 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.4k
views
Answer: Answer: Problem with DESeq2
22 months ago ATpoint ★ 4.4k
1
vote
0
replies
2.4k
views
Comment: Comment: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
22 months ago ATpoint ★ 4.4k
2
votes
1
reply
2.4k
views
Answer: Answer: Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
22 months ago ATpoint ★ 4.4k
1
vote
0
replies
1.9k
views
Comment: Comment: Instaling glmGamPoi
22 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.7k
views
Comment: Comment: Too many differentially expressed miRNA with limma
22 months ago ATpoint ★ 4.4k
0
votes
1
reply
1.1k
views
Answer: Answer: ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
22 months ago ATpoint ★ 4.4k
971 results • Page 11 of 20
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6