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Answer: Answer: Docker usage with Trio Bioconductor Package
23 months ago ATpoint ★ 4.8k
1
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719
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Answer: Answer: How to determine if any samples are outliers in PCA? What is the criteria?
23 months ago ATpoint ★ 4.8k
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2.7k
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Comment: Comment: optimHess problem in apeglm/DESeq2
23 months ago ATpoint ★ 4.8k
2
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7
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2.7k
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optimHess problem in apeglm/DESeq2
DESeq2 apeglm
updated 23 months ago by 43k • written 23 months ago by ★ 4.8k
3
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0
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1.1k
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Answer: Answer: 'Seurat' package
23 months ago ATpoint ★ 4.8k
0
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0
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728
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Answer: Answer: DESeq2: Comparison between 1 test sample with 1 control sample
23 months ago ATpoint ★ 4.8k
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1
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2.9k
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Comment: Comment: lfcshrink error DESeq2
23 months ago ATpoint ★ 4.8k
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1
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739
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Answer: Answer: Deseq2 design
23 months ago ATpoint ★ 4.8k
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1
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2.9k
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Comment: Comment: lfcshrink error DESeq2
23 months ago ATpoint ★ 4.8k
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1.7k
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Comment: Comment: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
24 months ago ATpoint ★ 4.8k
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1
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1.7k
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Answer: Answer: Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
24 months ago ATpoint ★ 4.8k
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0
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837
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Comment: Comment: load failed for ‘DESeq2’
24 months ago ATpoint ★ 4.8k
0
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0
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771
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Comment: Comment: WGCNA for one perturbation time series (pooled from two independent replicates)?
24 months ago ATpoint ★ 4.8k
1
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1
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1.7k
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Answer: Answer: failed to use tximport for creating count matrix from kallisto
24 months ago ATpoint ★ 4.8k
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1
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2.2k
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Answer: Answer: model matrix not full rank
24 months ago ATpoint ★ 4.8k
0
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0
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703
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Comment: Comment: ANOVA-like testing for bulkRNAseq with three conditions with Wald test
24 months ago ATpoint ★ 4.8k
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1
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752
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Answer: Answer: Different regions for normalisation
24 months ago ATpoint ★ 4.8k
1
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0
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744
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Comment: Comment: RNA seq with edgeR with several factors
24 months ago ATpoint ★ 4.8k
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0
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701
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Answer: Answer: Performing pair-wise comparisons for smaller p value analyzing time series data
24 months ago ATpoint ★ 4.8k
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0
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15k
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Comment: Comment: GSEA preranked analysis downstream of DEseq2
2.0 years ago ATpoint ★ 4.8k
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0
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1.5k
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Comment: Comment: Combine RNA-seq
2.0 years ago ATpoint ★ 4.8k
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1
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1.5k
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Answer: Answer: Combine RNA-seq
2.0 years ago ATpoint ★ 4.8k
1
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851
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Answer: Answer: RNA-seq data collected at differnt time points
2.0 years ago ATpoint ★ 4.8k
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0
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5.2k
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Answer: Answer: package ‘Bioconductor’ is not available for Bioconductor version '3.16'
2.0 years ago ATpoint ★ 4.8k
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1
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1.4k
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Answer: Answer: tximport error
2.0 years ago ATpoint ★ 4.8k
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921
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Comment: Comment: WGCNA problem
2.0 years ago ATpoint ★ 4.8k
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0
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1.2k
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Comment: Comment: fc value in ggmaplot does not correspond to the real lfc value on the plot
2.0 years ago ATpoint ★ 4.8k
1
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1
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1.2k
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Answer: Answer: fc value in ggmaplot does not correspond to the real lfc value on the plot
2.0 years ago ATpoint ★ 4.8k
1
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0
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1.4k
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Comment: Comment: calculate distance to a certain sequence in one gene
2.0 years ago ATpoint ★ 4.8k
0
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0
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507
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Comment: Comment: Package requires binary executable from external software?
2.0 years ago ATpoint ★ 4.8k
0
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1
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1.2k
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Comment: Comment: Tximeta error in analysis of downloaded data
2.0 years ago ATpoint ★ 4.8k
1
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1
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1.9k
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Answer: Answer: Speedglm dependency issue?
2.0 years ago ATpoint ★ 4.8k
1
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1
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2.2k
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Comment: Comment: How to get TPM / FPKM after batch correction with DESeq2?
2.0 years ago ATpoint ★ 4.8k
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0
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668
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Comment: Comment: Sample expression calculation in rna seq
2.0 years ago ATpoint ★ 4.8k
1
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1
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2.2k
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Answer: Answer: How to get TPM / FPKM after batch correction with DESeq2?
2.0 years ago ATpoint ★ 4.8k
2
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1
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1.5k
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Answer: Answer: Error in checkFullRank(modelMatrix)
2.0 years ago ATpoint ★ 4.8k
0
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0
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891
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Comment: Comment: Down weighing an outlier in DESeq2 ?
2.0 years ago ATpoint ★ 4.8k
1
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0
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2.9k
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Answer: Answer: FPKM t-test vs DEseq2
2.0 years ago ATpoint ★ 4.8k
0
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1
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891
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Answer: Answer: Down weighing an outlier in DESeq2 ?
2.0 years ago ATpoint ★ 4.8k
1
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0
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759
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Answer: Answer: Performing a one-sided test for differential expression analysis in edgeR
2.0 years ago ATpoint ★ 4.8k
1
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2
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4.5k
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Answer: Answer: DESeq2 for single cell pseudobulk processing
2.0 years ago ATpoint ★ 4.8k
2
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1
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819
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Comment: Comment: How Can I Assess the Reliability of BCV (Square-Root Dispersion) in Non-Replicat
2.0 years ago ATpoint ★ 4.8k
1
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1
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1.3k
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Answer: Answer: Removing Unwanted Variations
2.0 years ago ATpoint ★ 4.8k
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0
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1.5k
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Comment: Comment: Differential Expression Analysis between Clusters
2.0 years ago ATpoint ★ 4.8k
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1
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1.4k
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Answer: Answer: ModuleExprScore function/ hdWGNCA
2.0 years ago ATpoint ★ 4.8k
0
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3
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3.5k
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Answer: Answer: blockwiseModule crashes in the end and doesn't generate modules
2.0 years ago ATpoint ★ 4.8k
3
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1
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3.5k
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Answer: Answer: Normalisation of data using DESeq2 with multi-groups
2.0 years ago ATpoint ★ 4.8k
0
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1
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708
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Answer: Answer: DESeq2 design matrix accounting for high heterogeneity of individuals inside a g
2.0 years ago ATpoint ★ 4.8k
1
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0
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810
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Answer: Answer: Can I run deseq2 on two separate experiments at once?
2.0 years ago ATpoint ★ 4.8k
0
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0
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2.3k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
2.0 years ago ATpoint ★ 4.8k
1,056 results • Page 10 of 22
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