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782
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Comment: Comment: How Can I Assess the Reliability of BCV (Square-Root Dispersion) in Non-Replicat
22 months ago ATpoint ★ 4.6k
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1.2k
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Answer: Answer: Removing Unwanted Variations
22 months ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: Differential Expression Analysis between Clusters
22 months ago ATpoint ★ 4.6k
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1.3k
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Answer: Answer: ModuleExprScore function/ hdWGNCA
22 months ago ATpoint ★ 4.6k
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3
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2.9k
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Answer: Answer: blockwiseModule crashes in the end and doesn't generate modules
22 months ago ATpoint ★ 4.6k
3
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3.2k
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Answer: Answer: Normalisation of data using DESeq2 with multi-groups
22 months ago ATpoint ★ 4.6k
0
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1
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651
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Answer: Answer: DESeq2 design matrix accounting for high heterogeneity of individuals inside a g
22 months ago ATpoint ★ 4.6k
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752
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Answer: Answer: Can I run deseq2 on two separate experiments at once?
22 months ago ATpoint ★ 4.6k
0
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0
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2.0k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
22 months ago ATpoint ★ 4.6k
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1
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2.0k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
22 months ago ATpoint ★ 4.6k
1
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1
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2.0k
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Comment: Comment: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
22 months ago ATpoint ★ 4.6k
1
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1
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2.0k
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Answer: Answer: DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts n
22 months ago ATpoint ★ 4.6k
0
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1
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2.7k
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Comment: Comment: Multiple factor DSEq2 result generates weird volcano plot
22 months ago ATpoint ★ 4.6k
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0
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2.4k
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Answer: Answer: RNA-seq analysis without replicates
22 months ago ATpoint ★ 4.6k
0
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0
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402
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Answer: Answer: DESeq
22 months ago ATpoint ★ 4.6k
0
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1
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1.0k
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Comment: Comment: BiomaRt: problems annotating a list of DEGs from DESeq2
22 months ago ATpoint ★ 4.6k
0
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0
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973
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Answer: Answer: How to import dataset from other software into DESeq2?
22 months ago ATpoint ★ 4.6k
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1.3k
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Comment: Comment: Error with regionCounts()
22 months ago ATpoint ★ 4.6k
1
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1
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1.3k
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Answer: Answer: Error with regionCounts()
22 months ago ATpoint ★ 4.6k
0
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0
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711
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Answer: Answer: How to get around the warning message: mzR has been built against a different Rc
22 months ago ATpoint ★ 4.6k
0
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1
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1.2k
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Comment: Comment: Scaling and normalization by deconvolution of SMART-Seq 2 data
22 months ago ATpoint ★ 4.6k
0
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1
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2.2k
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Comment: Comment: how can I do gene differential analysis on data after vst
22 months ago ATpoint ★ 4.6k
0
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0
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1.1k
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Answer: Answer: ggplot and geom_lines for clustering
22 months ago ATpoint ★ 4.6k
1
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1
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2.2k
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Comment: Comment: how can I do gene differential analysis on data after vst
22 months ago ATpoint ★ 4.6k
1
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1
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3.7k
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Comment: Comment: How to combine two DESeq2 objects (dds) for analysis
22 months ago ATpoint ★ 4.6k
1
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1
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2.2k
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Comment: Comment: how can I do gene differential analysis on data after vst
22 months ago ATpoint ★ 4.6k
1
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1
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2.2k
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Answer: Answer: how can I do gene differential analysis on data after vst
22 months ago ATpoint ★ 4.6k
1
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1
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1.2k
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Comment: Comment: limma with or without intercept gives different results
22 months ago ATpoint ★ 4.6k
1
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0
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2.9k
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Comment: Comment: deseq2 normalization and statistical method
22 months ago ATpoint ★ 4.6k
1
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0
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912
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Answer: Answer: HISAT2 mapping
22 months ago ATpoint ★ 4.6k
1
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0
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1.1k
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Comment: Comment: Multifactorial Design for DESEQ2
22 months ago ATpoint ★ 4.6k
0
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0
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839
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Comment: Comment: Doubt about expression data as well as assay
22 months ago ATpoint ★ 4.6k
3
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1
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1.2k
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Answer: Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
22 months ago ATpoint ★ 4.6k
1
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1
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2.9k
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Answer: Answer: deseq2 normalization and statistical method
22 months ago ATpoint ★ 4.6k
0
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0
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1.4k
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Comment: Comment: Batch correction and Deseq2
22 months ago ATpoint ★ 4.6k
1
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1
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1.3k
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
23 months ago ATpoint ★ 4.6k
1
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0
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649
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Answer: Answer: Are polynomial contrasts for a time factor possible in DESeq2?
23 months ago ATpoint ★ 4.6k
0
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0
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5.3k
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Answer: Answer: How to change the dot size in plotPCA?
23 months ago ATpoint ★ 4.6k
0
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0
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1.6k
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Answer: Answer: DESeqDataSetFromMatrix NA values
23 months ago ATpoint ★ 4.6k
1
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1
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1.1k
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Answer: Answer: How to compute(calculate) rlog and vst provided from DESeq2
23 months ago ATpoint ★ 4.6k
0
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0
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612
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Answer: Answer: Outlier removal outcome
23 months ago ATpoint ★ 4.6k
0
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0
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1.8k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
23 months ago ATpoint ★ 4.6k
1
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0
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1.6k
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Answer: Answer: deseq2 RLE normalization
23 months ago ATpoint ★ 4.6k
0
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0
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944
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Answer: Answer: Using DESeq2 only for normalization
23 months ago ATpoint ★ 4.6k
0
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1
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1.3k
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Comment: Comment: hill-shaped p-value distributions using EdgeR
23 months ago ATpoint ★ 4.6k
0
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0
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1.4k
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Comment: Comment: different number of DEG because of outliers
updated 23 months ago by 43k • written 23 months ago by ★ 4.6k
1
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1
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1.4k
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Answer: Answer: different number of DEG because of outliers
23 months ago ATpoint ★ 4.6k
0
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1
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1.8k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
23 months ago ATpoint ★ 4.6k
0
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0
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623
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Answer: Answer: processing samples with significantly different counts
23 months ago ATpoint ★ 4.6k
0
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0
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1.8k
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Answer: Answer: DESeq Normalization and miRNAs Filtering
23 months ago ATpoint ★ 4.6k
1,017 results • Page 10 of 21
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