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Answer: Answer: different number of DEG because of outliers
18 months ago ATpoint ★ 4.4k
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1.6k
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Comment: Comment: DESeq Normalization and miRNAs Filtering
18 months ago ATpoint ★ 4.4k
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533
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Answer: Answer: processing samples with significantly different counts
18 months ago ATpoint ★ 4.4k
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1.6k
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Answer: Answer: DESeq Normalization and miRNAs Filtering
18 months ago ATpoint ★ 4.4k
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2
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835
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Answer: Answer: Differential expression analysis based on EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
18 months ago ATpoint ★ 4.4k
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865
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Comment: Comment: Does the running time of DESeq function is much more longer for design factor co
18 months ago ATpoint ★ 4.4k
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865
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Comment: Comment: Horizontal integration of two RNA-seq datasets derived from two different platfo
18 months ago ATpoint ★ 4.4k
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1.2k
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Answer: Answer: Batch correction and Deseq2
18 months ago ATpoint ★ 4.4k
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1.6k
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Comment: Comment: SingleR and gcc-8.3.0
18 months ago ATpoint ★ 4.4k
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792
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Answer: Answer: Heatmap of two conditions from the normalized gene count data
18 months ago ATpoint ★ 4.4k
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886
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Answer: Answer: Which samples to remove from analysis based on Cook's distance outliers plot
18 months ago ATpoint ★ 4.4k
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605
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Comment: Comment: DESeq2 for another layer of differential analysis
18 months ago ATpoint ★ 4.4k
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718
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Answer: Answer: Normalization of RNA seq data before DESeq2 and PCA in case of strong batch effe
18 months ago ATpoint ★ 4.4k
3
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981
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Answer: Answer: Batch question Bulk RNA-Seq
19 months ago ATpoint ★ 4.4k
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2.1k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
19 months ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
19 months ago ATpoint ★ 4.4k
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1.6k
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Comment: Comment: Knee and Inflection of DropletUtils
19 months ago ATpoint ★ 4.4k
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695
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Answer: Answer: Subsetting DESeq when different cell types
19 months ago ATpoint ★ 4.4k
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1
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991
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Answer: Answer: PCA subset of genes vs DE
19 months ago ATpoint ★ 4.4k
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1.1k
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Comment: Comment: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
19 months ago ATpoint ★ 4.4k
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1
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1.6k
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Comment: Comment: Knee and Inflection of DropletUtils
19 months ago ATpoint ★ 4.4k
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1.2k
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Answer: Answer: package ‘GenomeInfoDb’ could not be loaded
19 months ago ATpoint ★ 4.4k
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2.7k
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Answer: Answer: bwa mem2 index genome - chipseq analysis
19 months ago ATpoint ★ 4.4k
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1.1k
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Answer: Answer: Deseq2: Technical replicates for differential expression analysis
19 months ago ATpoint ★ 4.4k
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2.1k
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Answer: Answer: DESeq2 design after combatseq batch correction
19 months ago ATpoint ★ 4.4k
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962
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Answer: Answer: What is cpmByGroup used for?
19 months ago ATpoint ★ 4.4k
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1
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882
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Comment: Comment: Only getting 10 peaks from mac2 callpeak
19 months ago ATpoint ★ 4.4k
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1
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889
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Answer: Answer: Installation of R-packages for RNA-seq analysis
19 months ago ATpoint ★ 4.4k
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0
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592
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Comment: Comment: Rbam and Rqc files error
19 months ago ATpoint ★ 4.4k
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0
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513
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Comment: Comment: Log of Step 1
19 months ago ATpoint ★ 4.4k
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0
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592
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Comment: Comment: maxfragmentsize problem
19 months ago ATpoint ★ 4.4k
1
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1
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1.0k
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Answer: Answer: Query regarding error in installation of "microbiomeutilities" R package
19 months ago ATpoint ★ 4.4k
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3
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2.5k
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Answer: Answer: Understanding "gene ratio" when using plotEnrich(c())
19 months ago ATpoint ★ 4.4k
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1
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1.1k
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Answer: Answer: combining multiple salmon runs after tximport
19 months ago ATpoint ★ 4.4k
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1
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1.3k
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Answer: Answer: Why is my log fold change not centered around 0 and lower?
19 months ago ATpoint ★ 4.4k
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0
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3.2k
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Answer: Answer: DESeq2 after Seurat analysis on integrated datasets
19 months ago ATpoint ★ 4.4k
0
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0
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681
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Answer: Answer: logFoldChange results in inverted comparison
19 months ago ATpoint ★ 4.4k
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0
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2.0k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
19 months ago ATpoint ★ 4.4k
2
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1
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1.8k
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Answer: Answer: Input for MAST
19 months ago ATpoint ★ 4.4k
0
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1
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744
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Answer: Answer: Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
19 months ago ATpoint ★ 4.4k
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2
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642
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Answer: Answer: Differences in sample size between conditions - pairwise comparison
19 months ago ATpoint ★ 4.4k
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1
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2.3k
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Answer: Answer: Conducting pair-wise comparison in DESeq2?
19 months ago ATpoint ★ 4.4k
2
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1
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1.0k
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Answer: Answer: Updating DESeq2 object's design with sva output
19 months ago ATpoint ★ 4.4k
0
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1
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629
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Answer: Answer: Does DESeq2 work for investigating the gene differential expression before and a
19 months ago ATpoint ★ 4.4k
1
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1
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3.2k
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Answer: Answer: DESeq2::plotPCA()
19 months ago ATpoint ★ 4.4k
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1
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1.1k
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Answer: Answer: Error with FindConservedMarkers()
19 months ago ATpoint ★ 4.4k
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689
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Answer: Answer: How to add pvalue to boxplot?
19 months ago ATpoint ★ 4.4k
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0
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794
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Answer: Answer: struggling to create a heatmap
20 months ago ATpoint ★ 4.4k
2
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0
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2.5k
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Comment: Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
20 months ago ATpoint ★ 4.4k
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0
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1.5k
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Answer: Answer: Which genes are outliers in DESeq2?
20 months ago ATpoint ★ 4.4k
971 results • Page 10 of 20
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