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144
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Answer:
Answer: New to Deseq2 - DEG questions / MA plot
3 days ago
ATpoint
★ 4.4k
1
vote
1
reply
632
views
Comment:
Comment: Size factor normalized counts for between sample comparisons - correct?
4 weeks ago • updated 29 days ago
ATpoint
★ 4.4k
1
vote
1
reply
632
views
Comment:
Comment: Size factor normalized counts for between sample comparisons - correct?
4 weeks ago
ATpoint
★ 4.4k
0
votes
1
reply
237
views
Answer:
Answer: Questions in Regards to LFC shrinkage in DSeq2
4 weeks ago
ATpoint
★ 4.4k
1
vote
0
replies
340
views
Comment:
Comment: Gene filtering in DESeq2
4 weeks ago
ATpoint
★ 4.4k
1
vote
0
replies
232
views
Answer:
Answer: Deseq2 - differenc in results
4 weeks ago
ATpoint
★ 4.4k
3
votes
3
replies
348
views
voom does not seem to properly correct for library size
limma
updated 4 weeks ago by
Gordon Smyth
51k • written 4 weeks ago by
ATpoint
★ 4.4k
0
votes
0
replies
348
views
Comment:
Comment: voom does not seem to properly correct for library size
4 weeks ago
ATpoint
★ 4.4k
0
votes
1
reply
368
views
Answer:
Answer: More significant genes after lfcShrink in DEseq2?
5 weeks ago
ATpoint
★ 4.4k
1
vote
1
reply
661
views
Comment:
Comment: RNASeq normlization for samples with global shift in gene expression
5 weeks ago
ATpoint
★ 4.4k
2
votes
0
replies
297
views
Answer:
Answer: DESeq2 is it OK to scale transformed data in order to plot heatmaps?
6 weeks ago
ATpoint
★ 4.4k
2
votes
1
reply
396
views
Answer:
Answer: Why is the inclusion of RUVs not reflected in the EDA plots produced from normal
6 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
378
views
Answer:
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
7 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
572
views
Comment:
Comment: DiffBind full library size not reliable
7 weeks ago
ATpoint
★ 4.4k
1
vote
0
replies
441
views
Comment:
Comment: Optimizing CPM Calculation for Varied RNA-seq Data
7 weeks ago
ATpoint
★ 4.4k
0
votes
2
replies
572
views
Comment:
Comment: DiffBind full library size not reliable
7 weeks ago
ATpoint
★ 4.4k
0
votes
1
reply
572
views
Comment:
Comment: DiffBind full library size not reliable
7 weeks ago
ATpoint
★ 4.4k
0
votes
1
reply
572
views
Comment:
Comment: DiffBind full library size not reliable
7 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
486
views
Answer:
Answer: Validity of SingleR with very small bulk RNAseq reference
9 weeks ago
ATpoint
★ 4.4k
2
votes
2
replies
777
views
Answer:
Answer: Plot PCA with ellipses using ggplot
9 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
895
views
Comment:
Comment: Recount3: PCR duplicates
9 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
476
views
Comment:
Comment: Error when trying to do different pairwise comparisons and lfcshrink than what's
9 weeks ago
ATpoint
★ 4.4k
0
votes
1
reply
476
views
Answer:
Answer: Error when trying to do different pairwise comparisons and lfcshrink than what's
9 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
302
views
Answer:
Answer: How to rank DEG for GSEA using DEseq2 result ?
10 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
237
views
Answer:
Answer: Run DEXSeq successfully but got a result that padj==1 in all genes
10 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
285
views
Comment:
Comment: output from RAIN doesn't look rhythmic
10 weeks ago
ATpoint
★ 4.4k
0
votes
0
replies
228
views
Answer:
Answer: unreal negative log2fc values
12 weeks ago
ATpoint
★ 4.4k
0
votes
1
reply
376
views
Comment:
Comment: How to search Pubmed Central or other fulltext literature base using regex?
12 weeks ago
ATpoint
★ 4.4k
0
votes
2
replies
612
views
Comment:
Comment: Research Project - Expanding search funtionality on the GEO database
3 months ago
ATpoint
★ 4.4k
0
votes
0
replies
722
views
Comment:
Comment: Too many significant genes when integrating gtex and tcga
3 months ago
ATpoint
★ 4.4k
1
vote
0
replies
279
views
Answer:
Answer: DESeq2 - vst() - log2FC - no replicates
3 months ago
ATpoint
★ 4.4k
0
votes
0
replies
509
views
Answer:
Answer: PCA (Principal Component Analysis) plots from ChIP-seq data
3 months ago
ATpoint
★ 4.4k
0
votes
1
reply
798
views
Comment:
Comment: Create multiple DoparParams with different number of registered cores
3 months ago
ATpoint
★ 4.4k
2
votes
6
replies
798
views
Create multiple DoparParams with different number of registered cores
BiocParallel
updated 3 months ago by
James W. MacDonald
67k • written 3 months ago by
ATpoint
★ 4.4k
0
votes
1
reply
798
views
Comment:
Comment: Create multiple DoparParams with different number of registered cores
3 months ago
ATpoint
★ 4.4k
0
votes
1
reply
487
views
Comment:
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
3 months ago
ATpoint
★ 4.4k
0
votes
1
reply
487
views
Comment:
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
3 months ago
ATpoint
★ 4.4k
0
votes
0
replies
2.2k
views
Comment:
Comment: Multiple factor DSEq2 result generates weird volcano plot
3 months ago
ATpoint
★ 4.4k
0
votes
0
replies
467
views
Comment:
Comment: When I tried to use the functions from the celldex package to fetch information,
3 months ago
ATpoint
★ 4.4k
0
votes
0
replies
725
views
Comment:
Comment: Issues with installing Bioconductor packages (eg GEOquery)
3 months ago
ATpoint
★ 4.4k
0
votes
1
reply
725
views
Answer:
Answer: Issues with installing Bioconductor packages (eg GEOquery)
3 months ago
ATpoint
★ 4.4k
0
votes
0
replies
246
views
Answer:
Answer: How to access the Bioconductor in Windows
3 months ago
ATpoint
★ 4.4k
0
votes
0
replies
415
views
Comment:
Comment: Ploting of normalized counts after batch removal
3 months ago
ATpoint
★ 4.4k
1
vote
0
replies
399
views
Answer:
Answer: Deseq2
4 months ago
ATpoint
★ 4.4k
0
votes
0
replies
1.3k
views
Comment:
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
4 months ago
ATpoint
★ 4.4k
0
votes
1
reply
640
views
Comment:
Comment: Counter-directional LFC shrinkage
4 months ago
ATpoint
★ 4.4k
0
votes
0
replies
852
views
Comment:
Comment: Volcano plot of scRNA-seq data not "centered"
4 months ago
ATpoint
★ 4.4k
0
votes
1
reply
443
views
Answer:
Answer: Normalisation using clinical traits in RNA seq using DESeq2
4 months ago
ATpoint
★ 4.4k
0
votes
1
reply
852
views
Answer:
Answer: Volcano plot of scRNA-seq data not "centered"
4 months ago
ATpoint
★ 4.4k
0
votes
1
reply
1.0k
views
Comment:
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
4 months ago
ATpoint
★ 4.4k
971 results • Page
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