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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
1 day ago ATpoint ★ 4.8k
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696
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Answer: Answer: Log2foldchange strange behavior
8 days ago ATpoint ★ 4.8k
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696
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Comment: Comment: Log2foldchange strange behavior
8 days ago ATpoint ★ 4.8k
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Answer: Answer: WGCNA
11 days ago ATpoint ★ 4.8k
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Comment: Comment: Differential expression analysis using two TCGA datasets
11 days ago ATpoint ★ 4.8k
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Answer: Answer: PhD scholar
11 days ago ATpoint ★ 4.8k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
13 days ago ATpoint ★ 4.8k
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1.4k
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Answer: Answer: Origin of the labels for the SingleCellMultiModal dataset
14 days ago ATpoint ★ 4.8k
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Comment: Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
14 days ago ATpoint ★ 4.8k
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2.0k
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Comment: Comment: DiffBind can't find a DAR
15 days ago ATpoint ★ 4.8k
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2.5k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
15 days ago ATpoint ★ 4.8k
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762
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Comment: Comment: DESeq - help with pair wise comparisons
15 days ago ATpoint ★ 4.8k
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2.5k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
15 days ago ATpoint ★ 4.8k
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2.5k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
15 days ago ATpoint ★ 4.8k
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2.5k
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Comment: Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
18 days ago ATpoint ★ 4.8k
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551
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Answer: Answer: DESeq2
24 days ago ATpoint ★ 4.8k
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771
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Comment: Comment: ComBat with repeated measures
25 days ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: Surprising behavior for DEXseq dispersion estimate plot?
25 days ago ATpoint ★ 4.8k
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1.2k
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Comment: Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
27 days ago ATpoint ★ 4.8k
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684
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Answer: Answer: Explannation for ROAST results
28 days ago ATpoint ★ 4.8k
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1.3k
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Comment: Comment: Using TPM from tximport of Salmon output for singscore
4 weeks ago ATpoint ★ 4.8k
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585
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Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
5 weeks ago ATpoint ★ 4.8k
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340
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Comment: Comment: Problem installing package TxDb.Mmusculus.UCSC.mm10.knownGene
5 weeks ago ATpoint ★ 4.8k
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423
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Answer: Answer: affy::rma results doesn't match with ncbi website
5 weeks ago ATpoint ★ 4.8k
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Answer: Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
5 weeks ago ATpoint ★ 4.8k
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460
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Comment: Comment: Removing UTR from GTF for gene quantification
6 weeks ago ATpoint ★ 4.8k
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550
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Comment: Comment: Using tximport for kallisto aligned recount2 data
6 weeks ago ATpoint ★ 4.8k
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667
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Comment: Comment: how many significant figures are there in DESeq2 output
7 weeks ago ATpoint ★ 4.8k
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1.1k
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Comment: Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
7 weeks ago ATpoint ★ 4.8k
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667
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Answer: Answer: how many significant figures are there in DESeq2 output
7 weeks ago ATpoint ★ 4.8k
1
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0
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893
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Answer: Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
7 weeks ago ATpoint ★ 4.8k
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1.1k
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Answer: Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
7 weeks ago ATpoint ★ 4.8k
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1.0k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
7 weeks ago ATpoint ★ 4.8k
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318
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Answer: Answer: DEseq2 design for additive treatment
8 weeks ago ATpoint ★ 4.8k
2
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600
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Answer: Answer: Plot title for PCA in DESeq2
8 weeks ago ATpoint ★ 4.8k
0
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696
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Answer: Answer: Automatically install dependencies
9 weeks ago ATpoint ★ 4.8k
1
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1.1k
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Comment: Comment: Weird p-values using DESeq2?
9 weeks ago ATpoint ★ 4.8k
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1.1k
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Comment: Comment: Overcoming confounding in batch effect correction
9 weeks ago ATpoint ★ 4.8k
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1.1k
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Comment: Comment: Overcoming confounding in batch effect correction
9 weeks ago ATpoint ★ 4.8k
0
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466
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Answer: Answer: In WGCNA, what networkType should be used in pickSoftThreshold for a Signed Nowi
10 weeks ago ATpoint ★ 4.8k
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212
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Answer: Answer: Error: lexical error: invalid char in json text (alevin-seurat)
10 weeks ago ATpoint ★ 4.8k
0
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1
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421
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Answer: Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
11 weeks ago ATpoint ★ 4.8k
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1
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1.0k
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Comment: Comment: Why select top highly expressed genes based on normalized counts, but then plot
12 weeks ago ATpoint ★ 4.8k
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1.0k
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Answer: Answer: Why select top highly expressed genes based on normalized counts, but then plot
12 weeks ago ATpoint ★ 4.8k
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1
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486
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Comment: Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
12 weeks ago ATpoint ★ 4.8k
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256
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Answer: Answer: WGCNA sample-data preprocessing order
12 weeks ago ATpoint ★ 4.8k
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270
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Answer: Answer: WGCNA: Can we use high power (26) for signed network?
12 weeks ago ATpoint ★ 4.8k
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164
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Answer: Answer: Ph.D. scholar
12 weeks ago ATpoint ★ 4.8k
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634
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Comment: Comment: EdgeR Biological CVs
3 months ago ATpoint ★ 4.8k
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1
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652
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Answer: Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
3 months ago ATpoint ★ 4.8k
1,056 results • Page 1 of 22
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