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How well does "Trinity-Differential-Expression" work on normalized raw counts without RSEM abundance of estimation
Trinity DifferentialExpression RSEM RNAseq edgeR
4.0 years ago harelarik ▴ 60
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Comment: Comment: How well does "Trinity-Differential-Expression" work on normalized raw counts wi
4.0 years ago harelarik ▴ 60
0
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2
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1.8k
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Use of RSEM counts in WGCNA
rsemmed RSEM WGCNA
4.0 years ago harelarik ▴ 60
0
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1.8k
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Comment: Comment: Use of RSEM counts in WGCNA
4.0 years ago harelarik ▴ 60
0
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6.3k
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Comment: C: How to use RSEM value to find differentially expressed genes
4.2 years ago harelarik ▴ 60
0
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0
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6.3k
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Comment: C: How to use RSEM value to find differentially expressed genes
4.2 years ago harelarik ▴ 60
0
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1
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6.3k
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Comment: C: How to use RSEM value to find differentially expressed genes
4.2 years ago harelarik ▴ 60
0
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0
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2.2k
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Comment: C: Importing RSEM with tximport
4.2 years ago harelarik ▴ 60
0
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1
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6.3k
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Comment: C: How to use RSEM value to find differentially expressed genes
4.2 years ago harelarik ▴ 60
0
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1
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2.2k
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Comment: C: Importing RSEM with tximport
4.2 years ago harelarik ▴ 60
6
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13
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6.3k
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How to use RSEM value to find differentially expressed genes
RSEM limma edgeR voom normalization
updated 2.3 years ago by 51k • written 4.2 years ago by ▴ 60
0
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1
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2.2k
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Comment: C: Importing RSEM with tximport
4.2 years ago harelarik ▴ 60
0
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1
reply
2.2k
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Comment: C: Importing RSEM with tximport
4.2 years ago harelarik ▴ 60
0
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8
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2.2k
views
Importing RSEM with tximport
tximport RSEM import error
updated 4.2 years ago by 42k • written 4.2 years ago by ▴ 60
0
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1
reply
6.3k
views
Comment: C: How to use RSEM value to find differentially expressed genes
4.2 years ago harelarik ▴ 60
0
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0
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4.4k
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Comment: C: Which R version is needed for tximport package?
4.2 years ago harelarik ▴ 60
0
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1
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6.3k
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Comment: C: How to use RSEM value to find differentially expressed genes
4.2 years ago harelarik ▴ 60
0
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1
reply
4.4k
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Comment: C: Which R version is needed for tximport package?
4.2 years ago harelarik ▴ 60
0
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1
reply
4.4k
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Comment: C: Which R version is needed for tximport package?
4.2 years ago harelarik ▴ 60
2
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8
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4.4k
views
Which R version is needed for tximport package?
tximport package R version install tximport
4.2 years ago harelarik ▴ 60
0
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0
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4.4k
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Answer: A: Which R version is needed for tximport package?
4.2 years ago harelarik ▴ 60
0
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1
reply
4.4k
views
Comment: C: Which R version is needed for tximport package?
4.2 years ago harelarik ▴ 60
2
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1
reply
1.6k
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
4.7 years ago harelarik ▴ 60
0
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0
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1.6k
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Answer: A: Multiple protein ids issue- which protein IDs should be selected for downstream
4.7 years ago harelarik ▴ 60
0
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0
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1.2k
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Answer: A: Study Modules significance (or Modules Preservation) in ONE network
4.7 years ago harelarik ▴ 60
0
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2
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1.2k
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Study Modules significance (or Modules Preservation) in ONE network
modulePreservation WGCNA modules significance permutation
6.6 years ago • updated 4.7 years ago harelarik ▴ 60
0
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0
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9.3k
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Comment: C: WGCNA export to cytoscape
6.9 years ago harelarik ▴ 60
0
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1
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9.3k
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Comment: C: WGCNA export to cytoscape
6.9 years ago harelarik ▴ 60
0
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0
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9.3k
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Comment: C: WGCNA export to cytoscape
6.9 years ago harelarik ▴ 60
0
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0
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5.1k
views
Comment: C: How to select mergeCutHeight in WGCNA?
6.9 years ago harelarik ▴ 60
1
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1
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9.3k
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Comment: C: WGCNA export to cytoscape
6.9 years ago harelarik ▴ 60
2
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2
replies
5.1k
views
How to select mergeCutHeight in WGCNA?
WGCNA mergeCutHeight
updated 6.9 years ago by ★ 3.0k • written 6.9 years ago by ▴ 60
0
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0
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4.6k
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Comment: C: How to extract the voom normalized value for each observation?
7.0 years ago harelarik ▴ 60
0
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0
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4.6k
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Comment: C: How to extract the voom normalized value for each observation?
7.0 years ago harelarik ▴ 60
0
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0
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4.6k
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Comment: C: How to extract the voom normalized value for each observation?
7.0 years ago harelarik ▴ 60
0
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1
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4.6k
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Comment: C: How to extract the voom normalized value for each observation?
7.0 years ago harelarik ▴ 60
2
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8
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4.6k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights output
updated 7.0 years ago by 51k • written 7.0 years ago by ▴ 60
0
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0
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1.9k
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Comment: C: limma- time course multiple treatments
7.0 years ago harelarik ▴ 60
0
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0
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1.9k
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Comment: C: limma- time course multiple treatments
7.0 years ago harelarik ▴ 60
0
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1
reply
1.9k
views
Comment: C: limma- time course multiple treatments
7.0 years ago harelarik ▴ 60
0
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0
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1.1k
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Comment: C: Limma time-course: how to apply differential contrast if time zero is considered
7.0 years ago harelarik ▴ 60
0
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1
reply
1.9k
views
Comment: C: limma- time course multiple treatments
7.0 years ago harelarik ▴ 60
0
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9
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1.9k
views
limma- time course multiple treatments
limma time course
7.1 years ago • updated 7.0 years ago harelarik ▴ 60
0
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2
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1.1k
views
Limma time-course: how to apply differential contrast if time zero is considered both as treatment and control?
Limma time-course
7.0 years ago harelarik ▴ 60
0
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0
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2.5k
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Comment: C: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
7.1 years ago harelarik ▴ 60
0
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0
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2.5k
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Comment: C: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
7.1 years ago harelarik ▴ 60
0
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1
reply
2.5k
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Comment: A: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
7.1 years ago harelarik ▴ 60
2
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6
replies
2.5k
views
Does LIMMA accept as an input "variance Stabilizing Transformation" generated by DSEQ
LIMMA VST
7.3 years ago • updated 7.1 years ago harelarik ▴ 60
0
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1
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2.1k
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Answer: A: voomWithQualityWeights not functioning - function not found
updated 7.3 years ago by 51k • written 7.3 years ago by ▴ 60
1
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7
replies
2.1k
views
voomWithQualityWeights not functioning - function not found
limma
7.3 years ago harelarik ▴ 60
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