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How well does "Trinity-Differential-Expression" work on normalized raw counts without RSEM abundance of estimation
Trinity DifferentialExpression RSEM RNAseq edgeR
3.6 years ago harelarik ▴ 60
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Comment: Comment: How well does "Trinity-Differential-Expression" work on normalized raw counts wi
3.6 years ago harelarik ▴ 60
0
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2
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1.6k
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Use of RSEM counts in WGCNA
rsemmed RSEM WGCNA
3.6 years ago harelarik ▴ 60
0
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1.6k
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Comment: Comment: Use of RSEM counts in WGCNA
3.6 years ago harelarik ▴ 60
0
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5.5k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.8 years ago harelarik ▴ 60
0
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5.5k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.8 years ago harelarik ▴ 60
0
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1
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5.5k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.8 years ago harelarik ▴ 60
0
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0
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1.9k
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Comment: C: Importing RSEM with tximport
3.8 years ago harelarik ▴ 60
0
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1
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5.5k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.9 years ago harelarik ▴ 60
0
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1
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1.9k
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Comment: C: Importing RSEM with tximport
3.9 years ago harelarik ▴ 60
6
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13
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5.5k
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How to use RSEM value to find differentially expressed genes
RSEM limma edgeR voom normalization
updated 23 months ago by 51k • written 3.9 years ago by ▴ 60
0
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1
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1.9k
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Comment: C: Importing RSEM with tximport
3.9 years ago harelarik ▴ 60
0
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1
reply
1.9k
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Comment: C: Importing RSEM with tximport
3.9 years ago harelarik ▴ 60
0
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8
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1.9k
views
Importing RSEM with tximport
tximport RSEM import error
updated 3.9 years ago by 42k • written 3.9 years ago by ▴ 60
0
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1
reply
5.5k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.9 years ago harelarik ▴ 60
0
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0
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3.8k
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Comment: C: Which R version is needed for tximport package?
3.9 years ago harelarik ▴ 60
0
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1
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5.5k
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Comment: C: How to use RSEM value to find differentially expressed genes
3.9 years ago harelarik ▴ 60
0
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1
reply
3.8k
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Comment: C: Which R version is needed for tximport package?
3.9 years ago harelarik ▴ 60
0
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1
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3.8k
views
Comment: C: Which R version is needed for tximport package?
3.9 years ago harelarik ▴ 60
0
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0
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3.8k
views
Answer: A: Which R version is needed for tximport package?
3.9 years ago harelarik ▴ 60
2
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8
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3.8k
views
Which R version is needed for tximport package?
tximport package R version install tximport
3.9 years ago harelarik ▴ 60
0
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1
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3.8k
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Comment: C: Which R version is needed for tximport package?
3.9 years ago harelarik ▴ 60
0
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0
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1.4k
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Answer: A: Multiple protein ids issue- which protein IDs should be selected for downstream
4.3 years ago harelarik ▴ 60
2
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1
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1.4k
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Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
4.3 years ago harelarik ▴ 60
0
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2
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1.1k
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Study Modules significance (or Modules Preservation) in ONE network
modulePreservation WGCNA modules significance permutation
6.2 years ago • updated 4.3 years ago harelarik ▴ 60
0
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0
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1.1k
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Answer: A: Study Modules significance (or Modules Preservation) in ONE network
4.3 years ago harelarik ▴ 60
0
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0
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8.6k
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Comment: C: WGCNA export to cytoscape
6.5 years ago harelarik ▴ 60
0
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1
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8.6k
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Comment: C: WGCNA export to cytoscape
6.5 years ago harelarik ▴ 60
0
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0
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8.6k
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Comment: C: WGCNA export to cytoscape
6.5 years ago harelarik ▴ 60
0
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0
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4.6k
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Comment: C: How to select mergeCutHeight in WGCNA?
6.5 years ago harelarik ▴ 60
1
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1
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8.6k
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Comment: C: WGCNA export to cytoscape
6.5 years ago harelarik ▴ 60
2
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2
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4.6k
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How to select mergeCutHeight in WGCNA?
WGCNA mergeCutHeight
updated 6.5 years ago by ★ 3.0k • written 6.5 years ago by ▴ 60
0
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0
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4.3k
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Comment: C: How to extract the voom normalized value for each observation?
6.6 years ago harelarik ▴ 60
0
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0
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4.3k
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Comment: C: How to extract the voom normalized value for each observation?
6.6 years ago harelarik ▴ 60
0
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0
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4.3k
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Comment: C: How to extract the voom normalized value for each observation?
6.6 years ago harelarik ▴ 60
0
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1
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4.3k
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Comment: C: How to extract the voom normalized value for each observation?
6.6 years ago harelarik ▴ 60
2
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8
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4.3k
views
How to extract the voom normalized value for each observation?
voomWithQualityWeights output
updated 6.6 years ago by 51k • written 6.6 years ago by ▴ 60
0
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0
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1.8k
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Comment: C: limma- time course multiple treatments
6.6 years ago harelarik ▴ 60
0
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0
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1.8k
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Comment: C: limma- time course multiple treatments
6.6 years ago harelarik ▴ 60
0
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1
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1.8k
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Comment: C: limma- time course multiple treatments
6.6 years ago harelarik ▴ 60
0
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0
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983
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Comment: C: Limma time-course: how to apply differential contrast if time zero is considered
6.6 years ago harelarik ▴ 60
0
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1
reply
1.8k
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Comment: C: limma- time course multiple treatments
6.6 years ago harelarik ▴ 60
0
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9
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1.8k
views
limma- time course multiple treatments
limma time course
6.7 years ago • updated 6.6 years ago harelarik ▴ 60
0
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2
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983
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Limma time-course: how to apply differential contrast if time zero is considered both as treatment and control?
Limma time-course
6.6 years ago harelarik ▴ 60
0
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0
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2.3k
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Comment: C: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
6.7 years ago harelarik ▴ 60
0
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0
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2.3k
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Comment: C: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
6.7 years ago harelarik ▴ 60
2
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6
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2.3k
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Does LIMMA accept as an input "variance Stabilizing Transformation" generated by DSEQ
LIMMA VST
7.0 years ago • updated 6.7 years ago harelarik ▴ 60
0
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1
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2.3k
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Comment: A: Does LIMMA accept as an input "variance Stabilizing Transformation" generated by
6.7 years ago harelarik ▴ 60
0
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1
reply
2.0k
views
Answer: A: voomWithQualityWeights not functioning - function not found
updated 6.9 years ago by 51k • written 6.9 years ago by ▴ 60
1
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7
replies
2.0k
views
voomWithQualityWeights not functioning - function not found
limma
6.9 years ago harelarik ▴ 60
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