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Do I have clustering by library size?
PCA DESeq2 Normalization librarysize
updated 4.0 years ago by 42k • written 4.1 years ago by ▴ 10
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Comment: Comment: Do I have clustering by library size?
4.0 years ago pkachroo ▴ 10
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2.2k
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Comment: Comment: Do I have clustering by library size?
4.0 years ago pkachroo ▴ 10
0
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1
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2.2k
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Comment: Comment: Do I have clustering by library size?
4.0 years ago pkachroo ▴ 10
0
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1
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2.2k
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Comment: Comment: Do I have clustering by library size?
4.1 years ago pkachroo ▴ 10
0
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0
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2.2k
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Comment: Comment: Do I have clustering by library size?
4.1 years ago pkachroo ▴ 10
0
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0
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1.3k
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Comment: C: Discrepancy in extracting contrasts
7.1 years ago pkachroo ▴ 10
0
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2
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1.3k
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Discrepancy in extracting contrasts
deseq2 resultsnames batch effect contrast
updated 7.1 years ago by 42k • written 7.1 years ago by ▴ 10
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0
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7.3k
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Comment: C: Differences in PCA plot - rld versus vsd normalized data (DESeq2)
7.3 years ago pkachroo ▴ 10
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7.3k
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Comment: C: Differences in PCA plot - rld versus vsd normalized data (DESeq2)
7.3 years ago pkachroo ▴ 10
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1
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7.3k
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Comment: A: Differences in PCA plot - rld versus vsd normalized data (DESeq2)
7.3 years ago pkachroo ▴ 10
0
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8
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7.3k
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Differences in PCA plot - rld versus vsd normalized data (DESeq2)
deseq2 PCA batch effect
7.3 years ago pkachroo ▴ 10
0
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0
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4.5k
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Comment: C: PCA plot in DESeq2
7.8 years ago pkachroo ▴ 10
2
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2
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4.5k
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PCA plot in DESeq2
deseq2 pca plot
updated 7.9 years ago by 42k • written 7.9 years ago by ▴ 10
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1
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1.8k
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Comment: C: Comparing two RNASeq protocols using DESeq2
7.9 years ago pkachroo ▴ 10
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1
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1.8k
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Comment: C: Comparing two RNASeq protocols using DESeq2
7.9 years ago pkachroo ▴ 10
0
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1
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1.8k
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Comment: C: Comparing two RNASeq protocols using DESeq2
7.9 years ago pkachroo ▴ 10
0
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1
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1.8k
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Comment: C: Comparing two RNASeq protocols using DESeq2
7.9 years ago pkachroo ▴ 10
0
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9
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1.8k
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Comparing two RNASeq protocols using DESeq2
deseq2 adjusted pvalue
updated 7.9 years ago by 42k • written 7.9 years ago by ▴ 10
1
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6
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5.3k
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How to perform multiple pairwise comparisons
deseq2 bioconductor rnaseq
updated 22 months ago by 42k • written 8.1 years ago by ▴ 10
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1
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55k
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Answer: A: deseq2 filter the low counts
8.1 years ago pkachroo ▴ 10
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