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Answer: Answer: Which input data is acceptable for MAST?
3 months ago Andrew_McDavid ▴ 270
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Comment: Comment: Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and anot
22 months ago Andrew_McDavid ▴ 270
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Comment: Comment: Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and anot
22 months ago Andrew_McDavid ▴ 270
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Answer: Answer: Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and anot
23 months ago • updated 22 months ago Andrew_McDavid ▴ 270
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Answer: Answer: MAST compare two conditions with several donors
4.2 years ago Andrew_McDavid ▴ 270
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Comment: C: MAST invalid Hypothesis, class objectORconnection error
4.4 years ago Andrew_McDavid ▴ 270
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Comment: C: MAST invalid Hypothesis, class objectORconnection error
4.5 years ago Andrew_McDavid ▴ 270
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Comment: C: comparing 2 models with confounders with MAST (scRNA-seq DEA)
5.1 years ago Andrew_McDavid ▴ 270
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Answer: A: comparing 2 models with confounders with MAST (scRNA-seq DEA)
5.1 years ago Andrew_McDavid ▴ 270
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Answer: A: About getting DE genes using MAST
5.1 years ago Andrew_McDavid ▴ 270
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Answer: A: Minimum number of cells required for the MAST
5.4 years ago Andrew_McDavid ▴ 270
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2.2k
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Minimum number of cells required for the MAST
MAST scRNAseq differential expression
5.4 years ago Andrew_McDavid ▴ 270
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Answer: A: analysis of multiple batches and multiple treatment conditions in scRNA-seq
5.5 years ago Andrew_McDavid ▴ 270
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Comment: C: Estimation of non-trivial contrasts in MAST
5.7 years ago Andrew_McDavid ▴ 270
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Comment: C: Logistic regression in MAST - question
5.9 years ago Andrew_McDavid ▴ 270
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1.5k
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Answer: A: Logistic regression in MAST - question
5.9 years ago Andrew_McDavid ▴ 270
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2.1k
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Comment: C: Estimation of non-trivial contrasts in MAST
5.9 years ago Andrew_McDavid ▴ 270
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Answer: A: Estimation of non-trivial contrasts in MAST
5.9 years ago Andrew_McDavid ▴ 270
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1.5k
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Comment: C: Warning in bayes fit in MAST GSEA
6.4 years ago Andrew_McDavid ▴ 270
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1.8k
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Comment: C: Error in zlm function model matrix
6.7 years ago Andrew_McDavid ▴ 270
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1.8k
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Comment: C: Error in zlm function model matrix
6.7 years ago Andrew_McDavid ▴ 270
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1.8k
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Comment: C: Error in zlm function model matrix
6.7 years ago Andrew_McDavid ▴ 270
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2.3k
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Comment: C: Interpretation of cngeneson when doing differential expression analysis in MAST
6.8 years ago Andrew_McDavid ▴ 270
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2.3k
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Answer: A: Interpretation of cngeneson when doing differential expression analysis in MAST
6.8 years ago Andrew_McDavid ▴ 270
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Answer: A: MAST: testing differential expression with a nested factorial design
6.8 years ago Andrew_McDavid ▴ 270
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Comment: C: Using MAST with DropSeq data
6.8 years ago Andrew_McDavid ▴ 270
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Comment: C: MAST: What does the function gseaAfterBoot do exactly?
6.9 years ago Andrew_McDavid ▴ 270
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Answer: A: MAST: What does the function gseaAfterBoot do exactly?
6.9 years ago Andrew_McDavid ▴ 270
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Answer: A: MAST - not getting Hurdle p values
6.9 years ago Andrew_McDavid ▴ 270
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2.3k
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Comment: C: MAST - not getting Hurdle p values
6.9 years ago Andrew_McDavid ▴ 270
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2.3k
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Comment: C: MAST - not getting Hurdle p values
6.9 years ago Andrew_McDavid ▴ 270
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2.3k
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Comment: C: MAST - not getting Hurdle p values
6.9 years ago Andrew_McDavid ▴ 270
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2.4k
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Comment: C: single-cells RNA-seq analysis by MAST with unbalanced group size
6.9 years ago Andrew_McDavid ▴ 270
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Answer: A: Using MAST with DropSeq data
7.0 years ago Andrew_McDavid ▴ 270
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calculateQCmetrics doesn't accept `numeric` `feature_controls` in scater 1.6.2
scater
updated 7.0 years ago by ★ 28k • written 7.0 years ago by ▴ 270
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Answer: A: single-cells RNA-seq analysis by MAST with unbalanced group size
7.1 years ago Andrew_McDavid ▴ 270
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Comment: C: Differential Expression analysis between distinct scRNA-seq datasets
7.2 years ago Andrew_McDavid ▴ 270
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Answer: A: What is the most useful distance measure to use for cell clustering based on MAS
7.3 years ago Andrew_McDavid ▴ 270
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Comment: C: How do you test a contrast in MAST?
7.4 years ago Andrew_McDavid ▴ 270
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3.0k
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Answer: A: How do you test a contrast in MAST?
7.4 years ago Andrew_McDavid ▴ 270
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2.2k
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NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
7.5 years ago Andrew_McDavid ▴ 270
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2.2k
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Answer: A: NAs in continuous coefficient and fold change in `zlm`
7.5 years ago Andrew_McDavid ▴ 270
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3.5k
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Answer: A: Estimating cell size factors for single cell RNA-seq data
7.5 years ago Andrew_McDavid ▴ 270
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Answer: A: Intepretation of Z scores for gene set enrichment analysis in MAST
7.5 years ago Andrew_McDavid ▴ 270
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Comment: C: Modeling Dose-response data in MAST
7.5 years ago Andrew_McDavid ▴ 270
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Answer: A: Modeling Dose-response data in MAST
7.5 years ago Andrew_McDavid ▴ 270
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Answer: A: Removal of batch effects before non-linear clustering for scRNAseq
7.8 years ago Andrew_McDavid ▴ 270
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1.5k
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Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
7.8 years ago Andrew_McDavid ▴ 270
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2.7k
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Answer: A: MAST reported warning "Coefficients ... are never estimible and will be dropped.
7.8 years ago Andrew_McDavid ▴ 270
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1.6k
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ArrayExpress fails with experiments without array data but could still return parsed .idf and .sdrf
ArrayExpress
8.0 years ago Andrew_McDavid ▴ 270
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