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0
votes
0
replies
569
views
Comment:
Comment: ISO a solution to rank-order introns by transcript
4 months ago
mat149
▴ 80
3
votes
3
replies
569
views
ISO a solution to rank-order introns by transcript
GenomicRanges
GenomicFeatures
7 months ago • updated 4 months ago
mat149
▴ 80
3
votes
4
replies
759
views
Store output of matchPWM()
biostrings
Biostrings
12 months ago • updated 11 months ago
mat149
▴ 80
1
vote
0
replies
759
views
Answer:
Answer: Store output of matchPWM()
11 months ago
mat149
▴ 80
2
votes
1
reply
467
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 12 months ago by
Michael Love
43k • written 12 months ago by
mat149
▴ 80
0
votes
1
reply
759
views
Comment:
Comment: Store output of matchPWM()
12 months ago
mat149
▴ 80
0
votes
0
replies
519
views
ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
14 months ago
mat149
▴ 80
0
votes
1
reply
1.2k
views
Comment:
Comment: Need help generating BSgenome and orgdb
15 months ago
mat149
▴ 80
2
votes
1
reply
708
views
Need Help w/ Subset on GRangesList
GenomicRange
GenomicRanges
15 months ago
mat149
▴ 80
2
votes
4
replies
1.2k
views
Need help generating BSgenome and orgdb
OrgDb
BSgenome
18 months ago • updated 15 months ago
mat149
▴ 80
0
votes
1
reply
1.5k
views
Comment:
Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
18 months ago
mat149
▴ 80
0
votes
1
reply
1.5k
views
Comment:
Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
18 months ago
mat149
▴ 80
2
votes
5
replies
1.5k
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge
makeOrgPackageFromNCBI
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
mat149
▴ 80
1
vote
0
replies
1.6k
views
Comment:
C: indexBam(), summarizeOverlaps() error: RNA-seq
6.2 years ago
mat149
▴ 80
2
votes
3
replies
1.6k
views
indexBam(), summarizeOverlaps() error: RNA-seq
genomicAlignments
RNA-seq
Rsamtools
updated 6.2 years ago by
Mike Smith
★ 6.6k • written 6.2 years ago by
mat149
▴ 80
1
vote
0
replies
6.5k
views
Comment:
C: Using GenomicFeatures to extract the upstream and downstream region of a transcr
6.2 years ago
mat149
▴ 80
0
votes
0
replies
5.1k
views
Comment:
C: How to calculate log2 fold change between two groups in a microarray study
6.2 years ago
mat149
▴ 80
6
votes
3
replies
5.1k
views
How to calculate log2 fold change between two groups in a microarray study
limma
updated 6.2 years ago by
Gordon Smyth
52k • written 6.2 years ago by
mat149
▴ 80
0
votes
1
reply
1.3k
views
Making microarray probeset presence/absence calls
oligo
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
mat149
▴ 80
1
vote
0
replies
15k
views
Answer:
A: Converting gene symbol list to Entrez IDs
7.2 years ago
mat149
▴ 80
4
votes
2
replies
2.1k
views
Help: extract counts from RNA-seq .bam/.bai files
counts
edger
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
mat149
▴ 80
0
votes
0
replies
5.9k
views
Answer:
A: Duplicate gene ID's returned from limma microarray analysis
8.3 years ago
mat149
▴ 80
5
votes
11
replies
5.9k
views
Duplicate gene ID's returned from limma microarray analysis
limma
microarray
updated 3.0 years ago by
Gordon Smyth
52k • written 8.3 years ago by
mat149
▴ 80
0
votes
1
reply
5.9k
views
Comment:
C: Duplicate gene ID's returned from limma microarray analysis
8.3 years ago
mat149
▴ 80
0
votes
0
replies
1.2k
views
Comment:
A: Probe sequences to Entrez Ids
8.3 years ago
mat149
▴ 80
0
votes
0
replies
1.6k
views
Comment:
A: ISO help with goana
8.4 years ago
mat149
▴ 80
1
vote
5
replies
1.6k
views
ISO help with goana
limma
8.4 years ago
mat149
▴ 80
0
votes
1
reply
1.6k
views
Comment:
C: ISO help with goana
8.4 years ago
mat149
▴ 80
0
votes
1
reply
2.5k
views
Comment:
C: How to filter probesets from the expression set that do not contain Entrez/Gene
8.4 years ago
mat149
▴ 80
0
votes
4
replies
2.5k
views
How to filter probesets from the expression set that do not contain Entrez/Gene Symbol identifiers
oligo
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
mat149
▴ 80
0
votes
0
replies
5.1k
views
Comment:
C: How to select the genes mapped to an enriched KEGG pathway (kegga)
8.4 years ago
mat149
▴ 80
0
votes
1
reply
854
views
ISO help making a heatmap from a subset of microarray probes in the expression set
oligo
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
mat149
▴ 80
0
votes
0
replies
5.1k
views
Comment:
C: How to select the genes mapped to an enriched KEGG pathway (kegga)
8.4 years ago
mat149
▴ 80
0
votes
1
reply
5.1k
views
Comment:
C: How to select the genes mapped to an enriched KEGG pathway (kegga)
8.4 years ago
mat149
▴ 80
4
votes
5
replies
3.7k
views
How to make a (limma) heatmap displaying gene ID's as rownames
limma
microarray
8.4 years ago
mat149
▴ 80
0
votes
0
replies
3.7k
views
Comment:
A: How to make a (limma) heatmap displaying gene ID's as rownames
8.4 years ago
mat149
▴ 80
0
votes
5
replies
5.1k
views
How to select the genes mapped to an enriched KEGG pathway (kegga)
kegga
updated 8.4 years ago by
Gordon Smyth
52k • written 8.5 years ago by
mat149
▴ 80
0
votes
0
replies
2.2k
views
Comment:
C: need help with microarray GO enrichment using goana
8.5 years ago
mat149
▴ 80
0
votes
1
reply
2.2k
views
Comment:
C: need help with microarray GO enrichment using goana
8.5 years ago
mat149
▴ 80
0
votes
4
replies
2.2k
views
need help with microarray GO enrichment using goana
goana
limma
updated 8.5 years ago by
Gordon Smyth
52k • written 8.5 years ago by
mat149
▴ 80
0
votes
1
reply
1.1k
views
ISO help making a colored pathway diagram to display enriched KEGG pathways
limma
edger
updated 8.5 years ago by
Gordon Smyth
52k • written 8.5 years ago by
mat149
▴ 80
0
votes
2
replies
1.1k
views
Help with limma contrast/design matrices
limma contrast matrix
8.5 years ago
mat149
▴ 80
0
votes
0
replies
2.1k
views
Comment:
C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
8.5 years ago
mat149
▴ 80
0
votes
1
reply
2.1k
views
Comment:
C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
8.5 years ago
mat149
▴ 80
0
votes
1
reply
2.1k
views
Comment:
C: Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zeb
8.5 years ago
mat149
▴ 80
2
votes
6
replies
2.1k
views
Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zebgene.1.1.st)
affmetrix
microarray
limma
oligo
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
mat149
▴ 80
0
votes
2
replies
1.7k
views
Need help annotating Affymetrix 1.1ST microarrays
oligo
annotation
affymetrix microarrays
zebrafish
updated 8.6 years ago by
Guido Hooiveld
★ 4.1k • written 8.6 years ago by
mat149
▴ 80
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