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Comment:
Comment: DMRcate: how to compare two comparisons and whether replicate is necessary
2.8 years ago
xie186
• 0
0
votes
2
replies
1.1k
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DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate
WGBS
biological_replicate
2.8 years ago
xie186
• 0
0
votes
3
replies
2.3k
views
Individuals nested within blocks in DESeq2
deseq2
nested design
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
xie186
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0
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0
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2.3k
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Comment:
C: Individuals nested within blocks in DESeq2
5.9 years ago
xie186
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0
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1
reply
968
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ENSEMBL database for annotatr
annotatr
updated 6.4 years ago by
rcavalca
▴ 140 • written 6.4 years ago by
xie186
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1.2k
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Comment:
C: Unexpected results from annotatr
6.4 years ago
xie186
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2
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2
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1.2k
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Unexpected results from annotatr
annotatr
updated 6.4 years ago by
rcavalca
▴ 140 • written 6.4 years ago by
xie186
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1.0k
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Comment:
C: 'fill_order' in annotatr
6.4 years ago
xie186
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2
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2
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1.0k
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'fill_order' in annotatr
annotatr
updated 6.4 years ago by
rcavalca
▴ 140 • written 6.4 years ago by
xie186
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0
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1.5k
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Comment:
C: How can I use Annotatr on CDS?
6.4 years ago
xie186
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0
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1.5k
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Comment:
C: How can I use Annotatr on CDS?
6.4 years ago
xie186
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1
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3
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1.5k
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How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.4 years ago by
rcavalca
▴ 140 • written 6.4 years ago by
xie186
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0
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1.1k
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Comment:
C: Error message by dba.plotBox() function
6.8 years ago
xie186
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1.1k
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Comment:
C: Error message by dba.plotBox() function
6.8 years ago
xie186
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0
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4
replies
1.1k
views
Error message by dba.plotBox() function
diffbind
updated 6.8 years ago by
Rory Stark
★ 5.2k • written 6.8 years ago by
xie186
• 0
0
votes
3
replies
1.3k
views
About experimental design of RNA-seq
time course
block
batch effect
WGCNA
updated 7.3 years ago by
Michael Love
42k • written 7.3 years ago by
xie186
• 0
1
vote
1
reply
1.1k
views
How to interpret the SVA results
SVA
combat
RNA-seq
updated 7.3 years ago by
James W. MacDonald
66k • written 7.3 years ago by
xie186
• 0
0
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0
replies
3.7k
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Comment:
C: extract similar expressed genes (SEGs) rather than DEGs
7.3 years ago
xie186
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0
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0
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2.3k
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Comment:
C: How to adjust the parameters of WGCNA
7.4 years ago
xie186
• 0
1
vote
2
replies
2.3k
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How to adjust the parameters of WGCNA
WGCNA
RNA-seq
co-expression network
module
clustering
updated 7.4 years ago by
Peter Langfelder
★ 3.0k • written 7.4 years ago by
xie186
• 0
0
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0
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2.1k
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Comment:
C: Subtracting INPUT reads from ChIP read counts.
8.0 years ago
xie186
• 0
0
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4
replies
2.1k
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Subtracting INPUT reads from ChIP read counts.
diffbind
ChIP-seq
updated 5 months ago by
Rory Stark
★ 5.2k • written 8.0 years ago by
xie186
• 0
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