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Comment: C: Convert Normalized RNA-Seq counts to TPM after Batch Correction
6.2 years ago rrcutler ▴ 70
0
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1
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6.1k
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Comment: C: Convert Normalized RNA-Seq counts to TPM after Batch Correction
6.2 years ago rrcutler ▴ 70
4
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8
replies
6.1k
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Convert Normalized RNA-Seq counts to TPM after Batch Correction
sva deseq2 limma
updated 22 months ago by • 0 • written 6.2 years ago by ▴ 70
0
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1
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2.0k
views
Comment: C: Low Counts in top DE genes in DESeq2
6.4 years ago rrcutler ▴ 70
0
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1
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2.0k
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Comment: C: Low Counts in top DE genes in DESeq2
6.4 years ago rrcutler ▴ 70
1
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7
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2.0k
views
Low Counts in top DE genes in DESeq2
deseq2
updated 6.4 years ago by 42k • written 6.4 years ago by ▴ 70
0
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1
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1.9k
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Comment: C: Use interactions to get the difference in the effect of two treatments
6.4 years ago rrcutler ▴ 70
3
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4
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1.9k
views
Use interactions to get the difference in the effect of two treatments
deseq2
updated 6.5 years ago by 42k • written 6.5 years ago by ▴ 70
0
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0
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2.6k
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Answer: A: fdrtool - How does it work?
6.5 years ago rrcutler ▴ 70
2
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2
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2.6k
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fdrtool - How does it work?
fdrtool deseq2
6.6 years ago • updated 6.5 years ago rrcutler ▴ 70
0
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0
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2.7k
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Comment: C: DESeq2: How to find out how well the model fits the data?
6.6 years ago rrcutler ▴ 70
0
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2
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7.0k
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Comment: C: DESeq2 dispersion and p-value histograms
6.7 years ago rrcutler ▴ 70
5
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7
replies
7.0k
views
DESeq2 dispersion and p-value histograms
deseq2 rnaseq fdrtool dispersion
updated 6.7 years ago by ▴ 610 • written 6.7 years ago by ▴ 70
0
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1
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7.0k
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Comment: C: DESeq2 dispersion and p-value histograms
6.7 years ago rrcutler ▴ 70
0
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0
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5.1k
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Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
6.8 years ago rrcutler ▴ 70
0
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2
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5.1k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
6.8 years ago rrcutler ▴ 70
0
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1
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5.1k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
6.8 years ago rrcutler ▴ 70
0
votes
1
reply
5.1k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
6.8 years ago rrcutler ▴ 70
0
votes
0
replies
5.1k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
6.8 years ago rrcutler ▴ 70
0
votes
1
reply
5.1k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
6.8 years ago rrcutler ▴ 70
2
votes
12
replies
5.1k
views
DESeq2 Dispersion Shrinkage - more samples is better?
deseq2 DDS
updated 6.8 years ago by 42k • written 6.8 years ago by ▴ 70
0
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0
replies
838
views
Comment: C: DESeq2 comparing differential expression results
6.8 years ago rrcutler ▴ 70
2
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2
replies
838
views
DESeq2 comparing differential expression results
deseq2 edger
updated 6.8 years ago by 42k • written 6.8 years ago by ▴ 70
0
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1
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3.0k
views
Comment: C: DESeq2- what to do when two conditions share controls?
6.9 years ago rrcutler ▴ 70
0
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0
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2.2k
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Comment: C: 3 factor design formula 'Model Matrix not full rank'
6.9 years ago rrcutler ▴ 70
0
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1
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2.2k
views
Comment: C: 3 factor design formula 'Model Matrix not full rank'
6.9 years ago rrcutler ▴ 70
0
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1
reply
3.0k
views
Comment: C: DESeq2- what to do when two conditions share controls?
6.9 years ago rrcutler ▴ 70
0
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1
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2.6k
views
Answer: A: RNA-seq analysis across different experiments
6.9 years ago rrcutler ▴ 70
0
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1
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1.6k
views
Comment: C: DESeq2: test differences between log2FoldChanges
6.9 years ago rrcutler ▴ 70
2
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1
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3.0k
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Answer: A: DESeq2: resultsNames(dds): intercept
6.9 years ago rrcutler ▴ 70
0
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0
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2.2k
views
Comment: C: 3 factor design formula 'Model Matrix not full rank'
6.9 years ago rrcutler ▴ 70
2
votes
7
replies
2.2k
views
3 factor design formula 'Model Matrix not full rank'
deseq2 multiple factor design
updated 6.9 years ago by 42k • written 6.9 years ago by ▴ 70
0
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1
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2.2k
views
Comment: C: 3 factor design formula 'Model Matrix not full rank'
6.9 years ago rrcutler ▴ 70
0
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1
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2.8k
views
Comment: C: DESeq2 lfcShrink with interactions
6.9 years ago rrcutler ▴ 70
0
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1
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2.8k
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Comment: C: DESeq2 lfcShrink with interactions
6.9 years ago rrcutler ▴ 70
0
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1
reply
2.8k
views
Comment: C: DESeq2 lfcShrink with interactions
updated 6.9 years ago by 42k • written 6.9 years ago by ▴ 70
0
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1
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5.2k
views
Comment: C: DESEQ2--compare two log2-transformed fold changes
6.9 years ago rrcutler ▴ 70
3
votes
7
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2.8k
views
DESeq2 lfcShrink with interactions
deseq2 interactions logfoldchange
updated 6.9 years ago by 42k • written 6.9 years ago by ▴ 70
0
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1
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1.5k
views
Comment: C: Get specifically DE genes per each condition and Log2FC(B/A) vs Log2FC(C/A) DEs
7.0 years ago rrcutler ▴ 70
0
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0
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2.7k
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Comment: C: DESeq2 using interaction terms or grouping variable
7.0 years ago rrcutler ▴ 70
0
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4
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2.7k
views
DESeq2 using interaction terms or grouping variable
deseq2 rnaseq
7.0 years ago rrcutler ▴ 70
0
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0
replies
2.7k
views
Comment: C: DESeq2 using interaction terms or grouping variable
7.0 years ago rrcutler ▴ 70
1
vote
1
reply
1.1k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 70
1
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1
reply
1.2k
views
DESeqDataSet creation error
deseq2
updated 8.2 years ago by 42k • written 8.2 years ago by ▴ 70
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