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Comment: C: Convert Normalized RNA-Seq counts to TPM after Batch Correction
7.0 years ago rrcutler ▴ 70
0
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1
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7.4k
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Comment: C: Convert Normalized RNA-Seq counts to TPM after Batch Correction
7.0 years ago rrcutler ▴ 70
4
votes
8
replies
7.4k
views
Convert Normalized RNA-Seq counts to TPM after Batch Correction
sva deseq2 limma
updated 2.7 years ago by • 0 • written 7.0 years ago by ▴ 70
0
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1
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2.4k
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Comment: C: Low Counts in top DE genes in DESeq2
7.2 years ago rrcutler ▴ 70
0
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1
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2.4k
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Comment: C: Low Counts in top DE genes in DESeq2
7.2 years ago rrcutler ▴ 70
1
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7
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2.4k
views
Low Counts in top DE genes in DESeq2
deseq2
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 70
0
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1
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2.2k
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Comment: C: Use interactions to get the difference in the effect of two treatments
7.3 years ago rrcutler ▴ 70
3
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4
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2.2k
views
Use interactions to get the difference in the effect of two treatments
deseq2
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 70
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0
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3.2k
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Answer: A: fdrtool - How does it work?
7.3 years ago rrcutler ▴ 70
2
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2
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3.2k
views
fdrtool - How does it work?
fdrtool deseq2
7.4 years ago • updated 7.3 years ago rrcutler ▴ 70
0
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0
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3.2k
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Comment: C: DESeq2: How to find out how well the model fits the data?
7.4 years ago rrcutler ▴ 70
0
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2
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8.1k
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Comment: C: DESeq2 dispersion and p-value histograms
7.5 years ago rrcutler ▴ 70
5
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7
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8.1k
views
DESeq2 dispersion and p-value histograms
deseq2 rnaseq fdrtool dispersion
updated 7.5 years ago by ▴ 610 • written 7.5 years ago by ▴ 70
0
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1
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8.1k
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Comment: C: DESeq2 dispersion and p-value histograms
7.5 years ago rrcutler ▴ 70
0
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0
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6.0k
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Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
7.6 years ago rrcutler ▴ 70
0
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2
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6.0k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
7.6 years ago rrcutler ▴ 70
0
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1
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6.0k
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Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
7.6 years ago rrcutler ▴ 70
0
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1
reply
6.0k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
7.6 years ago rrcutler ▴ 70
0
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0
replies
6.0k
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Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
7.6 years ago rrcutler ▴ 70
0
votes
1
reply
6.0k
views
Comment: C: DESeq2 Dispersion Shrinkage - more samples is better?
7.6 years ago rrcutler ▴ 70
2
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12
replies
6.0k
views
DESeq2 Dispersion Shrinkage - more samples is better?
deseq2 DDS
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 70
0
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0
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1.1k
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Comment: C: DESeq2 comparing differential expression results
7.6 years ago rrcutler ▴ 70
2
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2
replies
1.1k
views
DESeq2 comparing differential expression results
deseq2 edger
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 70
0
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1
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3.7k
views
Comment: C: DESeq2- what to do when two conditions share controls?
7.7 years ago rrcutler ▴ 70
0
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0
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2.5k
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Comment: C: 3 factor design formula 'Model Matrix not full rank'
7.7 years ago rrcutler ▴ 70
0
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1
reply
2.5k
views
Comment: C: 3 factor design formula 'Model Matrix not full rank'
7.7 years ago rrcutler ▴ 70
0
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1
reply
3.7k
views
Comment: C: DESeq2- what to do when two conditions share controls?
7.7 years ago rrcutler ▴ 70
0
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1
reply
3.7k
views
Answer: A: RNA-seq analysis across different experiments
7.7 years ago rrcutler ▴ 70
0
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1
reply
1.9k
views
Comment: C: DESeq2: test differences between log2FoldChanges
7.7 years ago rrcutler ▴ 70
2
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1
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3.4k
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Answer: A: DESeq2: resultsNames(dds): intercept
7.7 years ago rrcutler ▴ 70
0
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0
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2.5k
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Comment: C: 3 factor design formula 'Model Matrix not full rank'
7.7 years ago rrcutler ▴ 70
2
votes
7
replies
2.5k
views
3 factor design formula 'Model Matrix not full rank'
deseq2 multiple factor design
updated 7.7 years ago by 43k • written 7.7 years ago by ▴ 70
0
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1
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2.5k
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Comment: C: 3 factor design formula 'Model Matrix not full rank'
7.7 years ago rrcutler ▴ 70
0
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1
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3.1k
views
Comment: C: DESeq2 lfcShrink with interactions
7.7 years ago rrcutler ▴ 70
0
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1
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3.1k
views
Comment: C: DESeq2 lfcShrink with interactions
7.7 years ago rrcutler ▴ 70
0
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1
reply
3.1k
views
Comment: C: DESeq2 lfcShrink with interactions
updated 7.7 years ago by 43k • written 7.7 years ago by ▴ 70
0
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1
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6.2k
views
Comment: C: DESEQ2--compare two log2-transformed fold changes
7.7 years ago rrcutler ▴ 70
3
votes
7
replies
3.1k
views
DESeq2 lfcShrink with interactions
deseq2 interactions logfoldchange
updated 7.7 years ago by 43k • written 7.7 years ago by ▴ 70
0
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1
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1.7k
views
Comment: C: Get specifically DE genes per each condition and Log2FC(B/A) vs Log2FC(C/A) DEs
7.8 years ago rrcutler ▴ 70
0
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0
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3.4k
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Comment: C: DESeq2 using interaction terms or grouping variable
7.8 years ago rrcutler ▴ 70
0
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4
replies
3.4k
views
DESeq2 using interaction terms or grouping variable
deseq2 rnaseq
7.8 years ago rrcutler ▴ 70
0
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0
replies
3.4k
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Comment: C: DESeq2 using interaction terms or grouping variable
7.8 years ago rrcutler ▴ 70
1
vote
1
reply
1.3k
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 70
1
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1
reply
1.3k
views
DESeqDataSet creation error
deseq2
updated 9.0 years ago by 43k • written 9.0 years ago by ▴ 70
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