Showing : zebrafish • reset
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2
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1.7k
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Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 8.4 years ago by ★ 4.1k • written 8.4 years ago by ▴ 80
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1
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1.5k
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Importing and Extracting Annotation
annotation zebrafish probe
updated 8.8 years ago by 67k • written 8.8 years ago by • 0
9
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1
reply
2.5k
views
News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 9.7 years ago by ▴ 390 • written 9.7 years ago by ▴ 800
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2
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1.3k
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Interspecies differential expression of orthologs with Edger
RNASeq Normalization Organism zebrafish edgeR
updated 10.4 years ago by 52k • written 10.4 years ago by ▴ 140
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0
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1.4k
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Useful information about Ensembl release 76 mart databases
Transcription zebrafish Transcription zebrafish
10.5 years ago Thomas Maurel ▴ 800
0
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2
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2.0k
views
TxDb file for Drerio (ie zebrafish)
Organism zebrafish CRISPRseek Organism zebrafish CRISPRseek
updated 10.9 years ago by 67k • written 10.9 years ago by ▴ 10
1
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1
reply
2.0k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 11.3 years ago by 67k • written 11.3 years ago by ▴ 80
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1
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1.5k
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ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 11.4 years ago by ★ 4.3k • written 11.4 years ago by ▴ 10
0
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1
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1.5k
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ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 11.4 years ago by ★ 4.3k • written 11.4 years ago by ★ 13k
0
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1
reply
1.2k
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affymtrix transcript_cluster categories
Normalization zebrafish Normalization zebrafish
updated 11.4 years ago by 67k • written 11.4 years ago by ▴ 80
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2
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1.4k
views
blast probe clusters when using Affymetrix Gene Array Strips
zebrafish zebrafish
updated 11.4 years ago by 67k • written 11.4 years ago by ▴ 80
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0
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1.7k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
11.8 years ago Thomas Maurel ▴ 800
0
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0
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1.4k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
12.0 years ago florian.hahne@novartis.com ★ 1.6k
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2
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2.0k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt zebrafish biomaRt
updated 12.0 years ago by ★ 1.6k • written 12.1 years ago by ★ 13k
1
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1
reply
3.2k
views
goseq/nullp with non-native identifiers
Annotation GO zebrafish goseq Annotation GO zebrafish goseq
updated 12.4 years ago by ▴ 100 • written 12.4 years ago by ▴ 140
0
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1
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1.7k
views
Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
12.7 years ago Thomas Maurel ▴ 800
0
votes
9
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2.1k
views
Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 13.9 years ago by 21k • written 13.9 years ago by 16k
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3
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1.9k
views
Mapping microarray probes to the genome using findOverlaps
Alignment Annotation zebrafish probe Alignment Annotation zebrafish probe
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 140
0
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0
replies
1.2k
views
Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
14.3 years ago Neel Aluru ▴ 460
0
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0
replies
1.2k
views
Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
14.4 years ago Neel Aluru ▴ 460
0
votes
1
reply
1.3k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ▴ 40
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1
reply
1.3k
views
Annotation in Agi4x44PreProcess
Annotation zebrafish probe Agi4x44PreProcess Annotation zebrafish probe Agi4x44PreProcess
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 40
0
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0
replies
1.6k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
14.7 years ago Neel Aluru ▴ 460
0
votes
1
reply
1.2k
views
GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 14.7 years ago by 67k • written 14.7 years ago by ▴ 460
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0
replies
1.3k
views
Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
14.9 years ago Rhoda Kinsella ▴ 660
0
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6
replies
1.3k
views
annaffy can't saveHTML
Annotation zebrafish Annotation zebrafish
updated 15.0 years ago by 67k • written 15.0 years ago by ★ 1.5k
0
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1
reply
827
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 15.0 years ago by ★ 2.0k • written 15.0 years ago by ★ 2.0k
0
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5
replies
1.5k
views
Agilent zebrafish4x44 database
zebrafish zebrafish
updated 15.2 years ago by ★ 1.3k • written 15.2 years ago by ▴ 460
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0
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915
views
Bsgenome Zv7 sequence data
Cancer Danio rerio zebrafish Cancer Danio rerio zebrafish
15.5 years ago Hervé Pagès 16k
0
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1
reply
966
views
siggenes: sam2html + affymetrix zebrafish
zebrafish zebrafish
15.7 years ago Bio Sam ▴ 60
0
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0
replies
1.1k
views
problem using annotation database with annaffy
Annotation GO zebrafish annaffy Annotation GO zebrafish annaffy
15.7 years ago Georg Otto ▴ 510
0
votes
0
replies
1.1k
views
Ensembl mart release 54: Useful information
Coverage zebrafish Coverage zebrafish
15.7 years ago Rhoda Kinsella ▴ 660
0
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0
replies
1.0k
views
JoVE: New Video Articles on Biomedical Research Techniques
zebrafish zebrafish
15.8 years ago Moshe Pritsker, Editor, JoVE ▴ 20
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1
reply
1.5k
views
Group-wise gcrma normalization
Microarray Normalization Clustering zebrafish probe gcrma Microarray Normalization probe
updated 15.9 years ago by ★ 6.5k • written 15.9 years ago by ▴ 30
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2
replies
1.8k
views
Help with loading newly created custom annotation db into R session
Annotation GO GUI zebrafish probe Annotation GO GUI zebrafish probe
updated 16.1 years ago by 67k • written 16.1 years ago by ▴ 300
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1
reply
907
views
zebrafish annotation
Annotation zebrafish Annotation zebrafish
updated 16.4 years ago by ★ 7.2k • written 16.4 years ago by ▴ 60
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2
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1.7k
views
agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
16.8 years ago Georg Otto ▴ 510
0
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0
replies
981
views
homologs for xenopus laevis
Xenopus laevis zebrafish biomaRt Xenopus laevis zebrafish biomaRt
17.4 years ago Mayte Suarez-Farinas ▴ 510
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2
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1.2k
views
simpleaffy QCstats and affyQAReport repost
zebrafish probe affy zebrafish probe affy
updated 17.5 years ago by ★ 1.1k • written 17.5 years ago by ▴ 70
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votes
3
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1.4k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 160
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0
replies
926
views
agilent zebrafish array annotation package
zebrafish zebrafish
19.1 years ago Georg Otto ▴ 510
0
votes
1
reply
1.4k
views
biomaRt gives only NA output
drosgenome1 zebrafish biomaRt drosgenome1 zebrafish biomaRt
updated 19.4 years ago by ▴ 420 • written 19.4 years ago by ▴ 150
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0
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1.4k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
19.5 years ago Steffen Durinck ▴ 420
0
votes
0
replies
1.3k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
19.5 years ago Georg Otto ▴ 510
0
votes
2
replies
1.3k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 19.5 years ago by ▴ 780 • written 19.5 years ago by ★ 1.4k
0
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1
reply
1.4k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 19.5 years ago by ★ 1.4k • written 19.5 years ago by ★ 1.1k
0
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4
replies
1.3k
views
Error in AnnBuilder writeAnnData2Pkg
Annotation zebrafish AnnBuilder Annotation zebrafish AnnBuilder
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 510
0
votes
0
replies
921
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
20.3 years ago Crispin Miller ★ 1.1k
0
votes
1
reply
885
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 20.3 years ago by 67k • written 20.3 years ago by ▴ 510
0
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1
reply
839
views
affymetrix zebrafish chip
zebrafish zebrafish
updated 20.6 years ago by 67k • written 20.6 years ago by ▴ 140
50 results • Page 1 of 1
Recent ...
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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Teacher to Axel Klenk ★ 1.1k
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
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Popular Question to Maria Doyle ▴ 100
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