Bioconductor Workflow

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Bioconductor Workflow

updated 2.9 years ago by Gordon Smyth 51k • written 2.9 years ago by sarastew1994 • 0

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ExperimentData Deprecation Software Release Workflow

3.1 years ago • updated 2.6 years ago shepherl 4.1k

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Workflow Software ExperimentData Deprecation

4.0 years ago • updated 3.5 years ago shepherl 4.1k

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960

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Software annotation experiment workflow

updated 4.3 years ago by shepherl 4.1k • written 4.3 years ago by gnanaprakash.s • 0

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rnaseqGene workflow deseq2

updated 4.9 years ago by Michael Love 42k • written 4.9 years ago by Assa Yeroslaviz ★ 1.5k

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software error deseq2 workflow rnaseqGene

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by pavan-bioconductor • 0

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RNA-Seq Workflow

updated 5.5 years ago by Gordon Smyth 51k • written 5.5 years ago by detroit.drive • 0

7 results • Page 1 of 1

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

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