Showing : without replicate • reset
1
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6
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 8.3 years ago by ▴ 10
0
votes
1
reply
762
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.6 years ago nilaycan • 0
0
votes
3
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1.2k
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time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
1
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5
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3.6k
views
steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
5
votes
6
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5.6k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
7.3 years ago Hesh ▴ 10
4
votes
5
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2.8k
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edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 8.7 years ago by ★ 28k • written 8.7 years ago by • 0
3
votes
6
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1.6k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
8.7 years ago gavin.oliver • 0
0
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3
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1.6k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.0 years ago by ▴ 670 • written 9.0 years ago by • 0
2
votes
7
replies
3.1k
views
edgeR for with no Replicate
edger without replicate
updated 9.2 years ago by ▴ 900 • written 9.2 years ago by • 0
1
vote
1
reply
1.6k
views
edgeR for without Replicate
edger without replicate
updated 9.2 years ago by ★ 28k • written 9.2 years ago by • 0
0
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10
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5.2k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 3.6 years ago by 43k • written 9.2 years ago by • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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