Showing : without replicate • reset
1
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6
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3.4k
views
Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma edger timecourse without replicate voom
written 8.4 years ago by ▴ 10
0
votes
1
reply
787
views
BSmooth does give DMRs without no replicate data sets
bsmooth without replicate dimension
6.8 years ago nilaycan • 0
0
votes
3
replies
1.3k
views
time-series, no replicates, no control groupe
deseq2 time-series without replicate
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
vote
5
replies
3.7k
views
steps to get up and down regulated genes using DESeq2
deseq2 without replicate no replicates
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
5
votes
6
replies
5.8k
views
Analyzing data without replicates using DiffBind
diffbind bioconductor differential binding analysis without replicate chipseq
7.4 years ago Hesh ▴ 10
4
votes
5
replies
2.8k
views
edgeR- DE analysis with no replicates
edger differential gene expression without replicate nested design help
updated 8.8 years ago by ★ 28k • written 8.8 years ago by • 0
3
votes
6
replies
1.7k
views
Question about edgeR usage with one case and multiple controls
edgeR differential expression without replicate
8.8 years ago gavin.oliver • 0
0
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3
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1.6k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.1 years ago by ▴ 670 • written 9.1 years ago by • 0
2
votes
7
replies
3.2k
views
edgeR for with no Replicate
edger without replicate
updated 9.3 years ago by ▴ 900 • written 9.3 years ago by • 0
1
vote
1
reply
1.6k
views
edgeR for without Replicate
edger without replicate
updated 9.4 years ago by ★ 28k • written 9.4 years ago by • 0
0
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10
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5.3k
views
DESeq2 analysis without Replicate
without Replicate deseq2
updated 3.8 years ago by 43k • written 9.4 years ago by • 0
11 results • Page 1 of 1
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Replies
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets by Gordon Smyth 52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Votes
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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