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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
limma
edger
timecourse
without replicate
voom
written 7.6 years ago by
Camila Orellana
▴ 10
0
votes
1
reply
642
views
BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
6.0 years ago
nilaycan
• 0
0
votes
3
replies
1.1k
views
time-series, no replicates, no control groupe
deseq2
time-series
without replicate
updated 6.0 years ago by
Michael Love
42k • written 6.0 years ago by
bahlv
• 0
1
vote
5
replies
3.1k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 6.1 years ago by
Michael Love
42k • written 6.1 years ago by
Tony
• 0
5
votes
6
replies
4.7k
views
Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
6.6 years ago
Hesh
▴ 10
4
votes
5
replies
2.5k
views
edgeR- DE analysis with no replicates
edger
differential gene expression
without replicate
nested design
help
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
knipehf
• 0
3
votes
6
replies
1.3k
views
Question about edgeR usage with one case and multiple controls
edgeR
differential expression
without replicate
8.0 years ago
gavin.oliver
• 0
0
votes
3
replies
1.4k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind
without replicate
updated 8.3 years ago by
Gord Brown
▴ 670 • written 8.3 years ago by
yiweihe
• 0
2
votes
7
replies
2.8k
views
edgeR for with no Replicate
edger
without replicate
updated 8.5 years ago by
Yunshun Chen
▴ 860 • written 8.5 years ago by
Sushant Pawar
• 0
1
vote
1
reply
1.5k
views
edgeR for without Replicate
edger
without replicate
updated 8.6 years ago by
Aaron Lun
★ 28k • written 8.6 years ago by
Sushant Pawar
• 0
0
votes
10
replies
4.8k
views
DESeq2 analysis without Replicate
without Replicate
deseq2
updated 3.0 years ago by
Michael Love
42k • written 8.6 years ago by
Sushant Pawar
• 0
11 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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