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21.8 years ago • updated 17 months ago
Gordon Smyth
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Recent ...
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Comment: How many of my genes from my gene list are in each KEGG pathway?
by
josephasmith1310
•
0
> You can compare the number in the column setSize versus the number of
> genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open!
by
Esperan
•
0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
Gordon Smyth
51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta.
> My questio…
Comment: Adjusted p-values become NA when sub-setting samples
by
txema.heredia
•
0
Thanks!
I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…
Answer: DESeq2 interaction between cancer cells and microenvironment cells
by
Michael Love
42k
I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …
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