Showing : wald • reset
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HELP - DESeq2 difference between LRT and Wald Test in RNA-seq/ATAC-seq
DESeq2 LRT Wald
updated 4 months ago by 67k • written 4 months ago by • 0
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3
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1.2k
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different stat and p values when filtering or not by lfc in DESeq2
DESeq2 wald stat
updated 2.3 years ago by ▴ 740 • written 2.3 years ago by • 0
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1.9k
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same padj for all the genes after DEseq analysis
etLRT WALD edgeR DESEq
updated 3.4 years ago by 43k • written 3.4 years ago by • 0
1
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1
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897
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multifactor desing with interaction LRT or Wald test?
deseq2 LRT wald
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
1
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1
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1.2k
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Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 5.2 years ago by ▴ 870 • written 5.2 years ago by ▴ 10
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1
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2.1k
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DESeq2 test LRT or WALD
deseq2 LRT WALD
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
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4
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1.5k
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DESeq2 Ribosome Profiling Time-series: Significantly Different Results for Wald and LRT test
deseq2 ribosome profiling wald lrt
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 20
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deseq2 LRT vs Wald test results for DE expression among 4 conditions
rnaseq deseq2 lrt wald differential gene expression
updated 2.7 years ago by • 0 • written 7.3 years ago by • 0
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3
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2.9k
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Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2 wald lrt genes significance
updated 8.5 years ago by 43k • written 8.5 years ago by ▴ 20
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11
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19k
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logfoldStandard Error and wald-statistics in DESeq2 results
deseq2 wald
updated 3.1 years ago by 43k • written 9.8 years ago by ▴ 20
10 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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