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significance
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reset
1
vote
8
replies
3.9k
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DESeq2: betaPrior changes significance dramatically
deseq2
betaPrior
shrinkage
significance
6.1 years ago
brynedal
▴ 40
1
vote
1
reply
1.5k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 6.7 years ago by
James W. MacDonald
66k • written 6.7 years ago by
skids121
• 0
3
votes
3
replies
1.0k
views
limma decideTests: only p-value less than (but not equal to) alpha are flagged as significant
limma
edger
significance
rnaseq
updated 7.3 years ago by
Gordon Smyth
51k • written 7.3 years ago by
roberto.spreafico
▴ 20
1
vote
4
replies
1.4k
views
comparing transcripts expression between conditions
salmon
transcripts
significance
counts
7.9 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
2.7k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 8.0 years ago by
Michael Love
42k • written 8.0 years ago by
aziza
▴ 20
0
votes
0
replies
869
views
cell analysis- significance output perturbed in shiny environment
cellcode
significance
8.1 years ago
christopher.clarskon15
▴ 20
6 results • Page
1 of 1
Recent ...
Replies
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
vohara4
• 0
"label" refers to my clusters, so there shouldn't be one. Both samples have cells in every cluster
Comment: Installing Bioconductor packages in Docker
by
Jon Bråte
▴ 250
How do you run your image after this? I need to specify a password...
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
ATpoint
★ 4.2k
What is the relationship between side and label?
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
vohara4
• 0
Thank you so much for your response. I've just tried adding Side to the summed object in both of the following manners, but I still get a "…
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
ATpoint
★ 4.2k
My guess is that `Side` did not make it into the summed object. You aggregate the SCE to summed with label and SampleName. How would the fu…
Votes
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
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