Bioconductor Volcano plot

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812

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DiffBind volcano plot software error

5.5 years ago rbronste ▴ 60

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1.2k

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volcano plot rna seq

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by adeler001 • 0

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1.7k

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Volcano plot Parameters

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by Sanches • 0

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1.4k

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limma volcano plot

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by yul • 0

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2.3k

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volcano plot edgr

8.2 years ago elena.capel ▴ 10

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1.5k

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microarray limma volcano plot

updated 10.5 years ago by Gordon Smyth 52k • written 10.5 years ago by jyoti_cad • 0

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Votes

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

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