Bioconductor Volcano plot

Showing : volcano plot • reset

vote

727

views

DiffBind volcano plot software error

5.0 years ago rbronste ▴ 60

votes

replies

1.1k

views

volcano plot rna seq

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by adeler001 • 0

votes

replies

1.5k

views

Volcano plot Parameters

updated 7.1 years ago by Gordon Smyth 51k • written 7.1 years ago by Sanches • 0

votes

1.3k

views

limma volcano plot

updated 7.5 years ago by Gordon Smyth 51k • written 7.5 years ago by yul • 0

votes

replies

2.0k

views

volcano plot edgr

7.8 years ago elena.capel ▴ 10

votes

replies

1.4k

views

microarray limma volcano plot

updated 10.0 years ago by Gordon Smyth 51k • written 10.0 years ago by jyoti_cad • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k