Bioconductor Volcano plot

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DiffBind volcano plot software error

4.6 years ago rbronste ▴ 60

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986

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volcano plot rna seq

updated 4.9 years ago by Michael Love 42k • written 4.9 years ago by adeler001 • 0

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1.4k

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Volcano plot Parameters

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by Sanches • 0

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1.2k

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limma volcano plot

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by yul • 0

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1.8k

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volcano plot edgr

7.4 years ago elena.capel ▴ 10

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1.3k

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microarray limma volcano plot

updated 9.7 years ago by Gordon Smyth 51k • written 9.7 years ago by jyoti_cad • 0

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Answer: Most sensible approach to a `stage*condition` design in DESeq2 by swbarnes2 ★ 1.4k

Doing a stage_treatment grouping is not the same as doing stage * treatment. You can use stage * treatment to compare one subgroup to anot…

Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730

You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…

Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0

Thank you all, I solved my issue by creating a for loop. Cheers!

Comment: Ranking the GSEA Results by alserg ▴ 270

Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself

Comment: Ranking the GSEA Results by alserg ▴ 270

Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…

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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

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Popular Question to mohammedtoufiq91 ▴ 10