Bioconductor Volcano plot

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738

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DiffBind volcano plot software error

5.0 years ago rbronste ▴ 60

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1.1k

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volcano plot rna seq

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by adeler001 • 0

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1.5k

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Volcano plot Parameters

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by Sanches • 0

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1.3k

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limma volcano plot

updated 7.6 years ago by Gordon Smyth 51k • written 7.6 years ago by yul • 0

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2.0k

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volcano plot edgr

7.8 years ago elena.capel ▴ 10

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1.4k

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microarray limma volcano plot

updated 10.1 years ago by Gordon Smyth 51k • written 10.1 years ago by jyoti_cad • 0

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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