Showing : volcano plot • reset
1
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diffBind volcano plot error
DiffBind volcano plot software error
5.1 years ago rbronste ▴ 60
0
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2
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1.2k
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Need help cprrecting overlappinge genes on valcano plot
volcano plot rna seq
updated 5.3 years ago by 43k • written 5.3 years ago by • 0
0
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4
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1.5k
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Volcano Plot after using Treat Function
Volcano plot Parameters
updated 7.3 years ago by 52k • written 7.3 years ago by • 0
2
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1
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1.3k
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Strange limma plot
limma volcano plot
updated 7.7 years ago by 52k • written 7.7 years ago by • 0
0
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9
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2.1k
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Volcano plot non-numeric argument error
volcano plot edgr
7.9 years ago elena.capel ▴ 10
3
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2
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1.4k
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Differential gene expression of Microarray data
microarray limma volcano plot
updated 10.2 years ago by 52k • written 10.2 years ago by • 0
6 results • Page 1 of 1
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Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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