Bioconductor Vignette

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SummarizedExperiment vignette

2.7 years ago BioInfoBeginnerrr • 0

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biomaRt vignette

updated 3.6 years ago by ashleymaeconard ▴ 10 • written 5.1 years ago by Russ Hyde ▴ 10

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newpackage vignette installation

updated 5.1 years ago by shepherl 4.1k • written 5.1 years ago by Krutik Patel ▴ 10

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flowcore vignette software error

updated 7.2 years ago by Jiang, Mike ★ 1.3k • written 7.2 years ago by Robert Baer ▴ 70

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biocstyle vignette

updated 7.4 years ago by Andrzej Oleś ▴ 750 • written 7.4 years ago by Aaron Lun ★ 28k

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STRINGdb vignette

updated 7.6 years ago by Gregor Rot ▴ 10 • written 7.6 years ago by mwinerip • 0

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software error cellmix vignette expressionset

7.9 years ago gabor.halasz • 0

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ggbio autoplot color vignette

updated 8.8 years ago by aaron ▴ 10 • written 8.8 years ago by timothypyork • 0

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github vignette test developers

updated 8.9 years ago by Dan Tenenbaum ★ 8.2k • written 8.9 years ago by anthonycolombo60 • 0

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vignette

updated 9.3 years ago by Dan Tenenbaum ★ 8.2k • written 9.3 years ago by KB ▴ 50

10 results • Page 1 of 1

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Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k

So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…

Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

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Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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