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vignette
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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
2.3 years ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
2.6k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 3.2 years ago by
ashleymaeconard
▴ 10 • written 4.7 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
1.0k
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 4.7 years ago by
shepherl
3.9k • written 4.7 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
946
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 6.8 years ago by
Jiang, Mike
★ 1.3k • written 6.8 years ago by
Robert Baer
▴ 70
7
votes
2
replies
1.3k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 7.0 years ago by
Andrzej Oleś
▴ 750 • written 7.0 years ago by
Aaron Lun
★ 28k
0
votes
3
replies
2.5k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 7.2 years ago by
Gregor Rot
▴ 10 • written 7.2 years ago by
mwinerip
• 0
3
votes
3
replies
1.9k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.5 years ago
gabor.halasz
• 0
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.4 years ago by
aaron
▴ 10 • written 8.4 years ago by
timothypyork
• 0
1
vote
2
replies
1.7k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 8.5 years ago by
Dan Tenenbaum
★ 8.2k • written 8.5 years ago by
anthonycolombo60
• 0
3
votes
2
replies
1.4k
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
KB
▴ 50
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Answer: Most sensible approach to a `stage*condition` design in DESeq2
by
swbarnes2
★ 1.4k
Doing a stage_treatment grouping is not the same as doing stage * treatment. You can use stage * treatment to compare one subgroup to anot…
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
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