Bioconductor Uniprot

Showing : uniprot • reset

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ID Uniprot EntrezID

2.8 years ago tom.kloter • 0

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6.4k

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clusterProfiler AnnotationHub GO uniprot

updated 12 months ago by Guido Hooiveld ★ 4.1k • written 4.1 years ago by Alberto • 0

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1.3k

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UniProt.ws UniProt

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by JavierM • 0

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1.3k

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Uniprot Annotation Identifiers

5.8 years ago Juliet Hannah ▴ 360

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1.1k

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drawProteins uniprot

updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by mblango • 0

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uniprot.ws uniprot uniprot accessions

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by balin • 0

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1.3k

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biomart r getbm uniprot

7.0 years ago lluex.rova • 0

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1.4k

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uniprot.ws uniprot

updated 7.3 years ago by James W. MacDonald 68k • written 7.3 years ago by l.nilse • 0

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2.0k

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Annotation mouse UNIPROT

updated 7.4 years ago by Mike Smith ★ 6.6k • written 7.4 years ago by julie.chevalier • 0

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2.4k

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uniprot.ws UniProt annotation

8.3 years ago • updated 8.2 years ago l.nilse • 0

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1.4k

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nimblegen Biomart Uniprot

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by theobroma22 ▴ 10

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1.9k

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uniprot uniprot.ws

9.0 years ago Dario Strbenac ★ 1.6k

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3.3k

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uniprot.ws subcellular location uniprot

9.0 years ago DHS • 0

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uniprot.ws uniprot

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by cerikahp • 0

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1.6k

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uniprot.ws uniprot uniprot accessions software error

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by john ▴ 10

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4.3k

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biomart uniprot unimart

9.3 years ago john ▴ 10

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4.3k

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uniprot.ws uniprot

updated 10.0 years ago by Marc Carlson ★ 7.2k • written 10.0 years ago by Guido Hooiveld ★ 4.1k

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uniprot.ws uniprot ensembl

updated 10.1 years ago by Marc Carlson ★ 7.2k • written 10.1 years ago by Joseph Barry ▴ 160

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biomaRt uniprot ensembl

updated 10.2 years ago by me • 0 • written 10.2 years ago by António Miguel de Jesus Domingues ▴ 510

19 results • Page 1 of 1

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Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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