Bioconductor Uniprot

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ID Uniprot EntrezID

2.7 years ago tom.kloter • 0

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clusterProfiler AnnotationHub GO uniprot

updated 11 months ago by Guido Hooiveld ★ 4.1k • written 4.0 years ago by Alberto • 0

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UniProt.ws UniProt

updated 4.2 years ago by James W. MacDonald 67k • written 4.2 years ago by JavierM • 0

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Uniprot Annotation Identifiers

5.7 years ago Juliet Hannah ▴ 360

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drawProteins uniprot

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by mblango • 0

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uniprot.ws uniprot uniprot accessions

updated 6.2 years ago by James W. MacDonald 67k • written 6.2 years ago by balin • 0

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biomart r getbm uniprot

6.9 years ago lluex.rova • 0

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uniprot.ws uniprot

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by l.nilse • 0

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Annotation mouse UNIPROT

updated 7.3 years ago by Mike Smith ★ 6.6k • written 7.3 years ago by julie.chevalier • 0

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uniprot.ws UniProt annotation

8.2 years ago l.nilse • 0

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nimblegen Biomart Uniprot

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by theobroma22 ▴ 10

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uniprot uniprot.ws

8.9 years ago Dario Strbenac ★ 1.5k

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uniprot.ws subcellular location uniprot

8.9 years ago DHS • 0

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uniprot.ws uniprot

updated 9.1 years ago by James W. MacDonald 67k • written 9.2 years ago by cerikahp • 0

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uniprot.ws uniprot uniprot accessions software error

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by john ▴ 10

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biomart uniprot unimart

9.2 years ago john ▴ 10

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uniprot.ws uniprot

updated 9.9 years ago by Marc Carlson ★ 7.2k • written 9.9 years ago by Guido Hooiveld ★ 4.1k

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uniprot.ws uniprot ensembl

updated 10.0 years ago by Marc Carlson ★ 7.2k • written 10.0 years ago by Joseph Barry ▴ 160

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biomaRt uniprot ensembl

updated 10.1 years ago by me • 0 • written 10.1 years ago by António Miguel de Jesus Domingues ▴ 510

19 results • Page 1 of 1

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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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