Showing : txdb.hsapiens.ucsc.hg38.knowngene • reset
0
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1
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177
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promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 3 months ago by 68k • written 3 months ago by ▴ 20
4
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8
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2.5k
views
TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation
2.1 years ago davidhillis • 0
0
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2
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1.0k
views
microRNAs not available in TxDb.Hsapiens.UCSC.hg38.knownGene
microRNA TxDb.Hsapiens.UCSC.hg38.knownGene
2.3 years ago Lluís Revilla Sancho ▴ 760
2
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1
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4.8k
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Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
3.1 years ago Theresa ▴ 20
0
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3
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1.8k
views
transcripts are not true in TxDb.Hsapiens.UCSC.hg38.knownGene
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
0
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1
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2.4k
views
No 'TxDb.Hsapiens.UCSC.hg38.knownGene' object
TxDb.Hsapiens.UCSC.hg38.knownGene
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
2
votes
4
replies
1.4k
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 5.2 years ago by ▴ 160 • written 5.2 years ago by • 0
6
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5
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1.4k
views
PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene
updated 5.3 years ago by 4.1k • written 5.3 years ago by ▴ 150
3
votes
1
reply
1.1k
views
HLA genes missing from TxDb.Hsapiens.UCSC.hg38.knownGene
HLA TxDb.Hsapiens.UCSC.hg38.knownGene
updated 5.3 years ago by ▴ 160 • written 5.3 years ago by ▴ 30
2
votes
10
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3.6k
views
TxDb.Hsapiens.UCSC.hg38.ensGene doesn't exist
TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 160
2
votes
5
replies
2.6k
views
How to construct a subset of TxDb object from TxDb.Hsapiens.UCSC.hg38.knownGene and selected genes
TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object
6.0 years ago Ruichao.Zeng ▴ 20
1
vote
12
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3.7k
views
Error: C stack usage when installing Txdb package
txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db
updated 7.4 years ago by ★ 3.8k • written 7.4 years ago by ★ 1.1k
1
vote
0
replies
1.8k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
7.6 years ago Leonardo Collado Torres ★ 1.1k
3
votes
3
replies
3.1k
views
Transcripts in TxDb.Hsapiens.UCSC.hg38.knownGene but not in ucsc genome brower
annotation txdb.hsapiens.ucsc.hg38.knowngene bug
8.5 years ago shilin.zhao ▴ 40
9
votes
4
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4.0k
views
PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation
9.0 years ago enricoferrero ▴ 680
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Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq by caroline.zanchi • 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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