Bioconductor Txdb.hsapiens.ucsc.hg38.knowngene

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147

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 11 weeks ago by James W. MacDonald 68k • written 11 weeks ago by linouhao ▴ 20

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2.4k

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

2.1 years ago • updated 2.0 years ago davidhillis • 0

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1.0k

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

2.2 years ago Lluís Revilla Sancho ▴ 760

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4.7k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

3.1 years ago Theresa ▴ 20

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1.8k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.3 years ago by Hervé Pagès 16k • written 3.3 years ago by BioEpi • 0

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2.3k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by lukijanczukpawel • 0

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1.3k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 5.1 years ago by kayla.interdonato ▴ 160 • written 5.1 years ago by jam526 • 0

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1.4k

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.2 years ago by shepherl 4.1k • written 5.2 years ago by bernatgel ▴ 150

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1.1k

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.2 years ago by kayla.interdonato ▴ 160 • written 5.2 years ago by Kamil Slowikowski ▴ 30

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3.6k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 5.5 years ago by James W. MacDonald 68k • written 5.5 years ago by Aditya ▴ 160

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2.6k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.9 years ago Ruichao.Zeng ▴ 20

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3.6k

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 7.3 years ago by Simon Anders ★ 3.8k • written 7.3 years ago by Mark Dunning ★ 1.1k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

7.5 years ago Leonardo Collado Torres ★ 1.1k

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3.0k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

8.5 years ago shilin.zhao ▴ 40

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4.0k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

9.0 years ago enricoferrero ▴ 680

15 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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