Bioconductor Txdb.hsapiens.ucsc.hg38.knowngene

Showing : txdb.hsapiens.ucsc.hg38.knowngene • reset

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121

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5 weeks ago by James W. MacDonald 68k • written 5 weeks ago by linouhao ▴ 20

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2.3k

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

23 months ago davidhillis • 0

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978

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

2.1 years ago Lluís Revilla Sancho ▴ 760

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4.6k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

2.9 years ago Theresa ▴ 20

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1.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.2 years ago by Hervé Pagès 16k • written 3.2 years ago by BioEpi • 0

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2.2k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.0 years ago by James W. MacDonald 68k • written 4.0 years ago by lukijanczukpawel • 0

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1.3k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 5.0 years ago by kayla.interdonato ▴ 160 • written 5.0 years ago by jam526 • 0

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1.3k

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.1 years ago by shepherl 4.1k • written 5.1 years ago by bernatgel ▴ 150

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1.0k

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.1 years ago by kayla.interdonato ▴ 160 • written 5.1 years ago by Kamil Slowikowski ▴ 30

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3.5k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by Aditya ▴ 160

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2.5k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.8 years ago Ruichao.Zeng ▴ 20

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3.4k

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 7.2 years ago by Simon Anders ★ 3.8k • written 7.2 years ago by Mark Dunning ★ 1.1k

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1.7k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

7.4 years ago Leonardo Collado Torres ★ 1.1k

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3.0k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

8.4 years ago shilin.zhao ▴ 40

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3.9k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.8 years ago enricoferrero ▴ 680

15 results • Page 1 of 1

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Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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