Showing : transcription • reset
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Is there a Bioconductor package to calculate TFs regulatory networks?
TFs Transcription regulator
2.4 years ago OliverBoynton • 0
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2.1k
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Getting annotation into GOstat
Transcription Transcription
updated 6.8 years ago by • 0 • written 12.1 years ago by ★ 6.0k
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1.2k
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Reference annotation file contains only transcript and CDS information, how to analyze the different expression of genes?
transcription hisat2
7.0 years ago zoukai3412085 • 0
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Job: PhD computational position - Milan
epigenetics transcription computational biology Job
7.4 years ago mattia pelizzola ▴ 200
1
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4
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1.4k
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DESeq2: Tests of log2 differences
deseq2 rna-seq transcription dgea
7.5 years ago fabian ▴ 40
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1.1k
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Bioconductor for predicting transcription factors from a gene list?
transcription transcriptdb
7.5 years ago hkarakurt ▴ 20
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1
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1.5k
views
TF ANALYSIS USING JASPAR
transcription jaspar
updated 7.6 years ago by 67k • written 7.6 years ago by ▴ 30
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3
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2.5k
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Gramene now available via biomaRt
SNP Transcription biomaRt Vega SNP Transcription biomaRt Vega
updated 8.1 years ago by • 0 • written 17.8 years ago by ▴ 580
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News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
8.4 years ago Matthew Ritchie ▴ 1000
3
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1.9k
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News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
9.4 years ago • updated 9.3 years ago Matthew Ritchie ▴ 1000
0
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2
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4.0k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 9.4 years ago by • 0 • written 11.6 years ago by ★ 8.2k
4
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0
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1.6k
views
News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
9.4 years ago Matthew Ritchie ▴ 1000
0
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1
reply
2.6k
views
Interspecies differential expression of orthologs with Edger
Transcription edgeR Transcription edgeR
10.2 years ago Tim Triche ★ 4.2k
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11
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2.4k
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Interspecies differential expression of orthologs with Edger
Transcription edgeR Transcription edgeR
updated 10.2 years ago by 51k • written 10.2 years ago by ▴ 140
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1.4k
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rsqlite for windows from fhcrc
Transcription BiocInstaller Transcription BiocInstaller
updated 10.3 years ago by 25k • written 10.3 years ago by ★ 6.5k
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0
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1.4k
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Useful information about Ensembl release 76 mart databases
Transcription zebrafish Transcription zebrafish
10.3 years ago Thomas Maurel ▴ 800
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1
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1.9k
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An. Gambie RNA-Seq differential expression using gage and pathview
Transcription Annotation Normalization gage pathview Transcription Annotation Normalization
updated 10.4 years ago by ▴ 20 • written 10.4 years ago by ★ 1.6k
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0
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1.3k
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An. Gambie RNA-Seq differential expression using gage and pathview
Transcription Normalization gage Transcription Normalization gage
10.4 years ago Saul Lozano ▴ 20
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4
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1.5k
views
Limma package and minimal number of genes
Transcription limma Transcription limma
updated 10.5 years ago by ★ 1.3k • written 10.5 years ago by ▴ 10
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1
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1.3k
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total count filter cutoff
Transcription Transcription
updated 10.6 years ago by ▴ 20 • written 10.6 years ago by ★ 13k
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1
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2.3k
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Deseq2-help
Transcription DESeq DESeq2 Transcription DESeq DESeq2
updated 10.6 years ago by ▴ 30 • written 10.6 years ago by 42k
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1.5k
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question on MotifDb package
Transcription MotifDb Transcription MotifDb
10.7 years ago Paul Shannon ▴ 470
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votes
7
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2.3k
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Low number of replicates DESeq
Transcription GO DESeq2 Transcription GO DESeq2
updated 10.7 years ago by 42k • written 10.7 years ago by ▴ 130
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0
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1.5k
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questions related to DiffBind package
Transcription Normalization DiffBind Transcription Normalization DiffBind
10.8 years ago Rory Stark ★ 5.2k
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1
reply
1.7k
views
DiffBind loading Problem
Transcription ChIPSeq chipseq DiffBind Transcription ChIPSeq chipseq DiffBind
10.8 years ago Rory Stark ★ 5.2k
0
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4
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1.7k
views
Rcade analysis without ChIP-seq replicates
Transcription Rcade Transcription Rcade
updated 10.8 years ago by ▴ 60 • written 10.8 years ago by ▴ 30
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2
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2.4k
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ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 10.9 years ago by ★ 6.8k • written 10.9 years ago by ▴ 30
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1
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2.1k
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Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 11.0 years ago by ▴ 80 • written 11.0 years ago by ▴ 20
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0
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4.3k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
11.1 years ago Dan Tenenbaum ★ 8.2k
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1.4k
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DNaseR - a new Bioconductor package for DNase-seq digital genomic footprinting
Transcription DNaseR Transcription DNaseR
11.1 years ago Pedro Madrigal ▴ 20
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0
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3.1k
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DiffBind questions
Transcription Cancer DiffBind MMDiff Transcription Cancer DiffBind MMDiff
11.2 years ago Rory Stark ★ 5.2k
0
votes
2
replies
4.0k
views
TranscriptDb of GENCODE Genes
Transcription Annotation Transcription Annotation
updated 11.3 years ago by ★ 7.2k • written 11.3 years ago by ★ 1.5k
1
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4
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1.6k
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Is GO.db out of date?
Transcription GO Transcription GO
11.7 years ago chawla ▴ 190
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2
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1.3k
views
matchPWM() questions
Transcription Transcription
updated 11.7 years ago by 16k • written 11.7 years ago by ▴ 340
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1.2k
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BitSeq: Required input for 3' bias correction on transcripts.
Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq
11.8 years ago Peter Glaus ▴ 70
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1
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1.8k
views
promoter prediction
Transcription MotIV MotifDb Transcription MotIV MotifDb
updated 12.0 years ago by ▴ 380 • written 12.0 years ago by ▴ 750
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
12.1 years ago SSc Array Core ▴ 10
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0
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3.3k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
12.1 years ago Dan Tenenbaum ★ 8.2k
1
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5
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2.4k
views
paCalls oligo package
Transcription oligo Transcription oligo
updated 12.2 years ago by 67k • written 12.2 years ago by ▴ 190
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1
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2.0k
views
Bioconductor Digest, Vol 115, Issue 22
Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 10
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0
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1.4k
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NGS public data analysis
Transcription DEGseq Transcription DEGseq
12.2 years ago Jill Pleasance ▴ 10
0
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1
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1.6k
views
Differential expression analysis of CAGE data
Transcription Annotation convert edgeR DESeq Transcription Annotation convert edgeR DESeq
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 30
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0
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1.1k
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ChIPpeakAnno - c elegans annotation feature type: translation start site
Transcription Transcription
12.2 years ago Julie Zhu ★ 4.3k
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4
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5.0k
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GRanges DitancetoNearest query
Transcription GenomicRanges Transcription GenomicRanges
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 150
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0
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1.0k
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GOstats adding custom annotations
Transcription miRNA GO Transcription miRNA GO
12.3 years ago sudeep s ▴ 60
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2
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1.9k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 12.4 years ago by 67k • written 12.4 years ago by ★ 13k
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4
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1.6k
views
AffyID mapping question
Transcription mouse4302 Transcription mouse4302
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ★ 13k
0
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11
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2.8k
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"graphite" Biocarta 'native' graphs different from Biocarta web site?
Transcription Pathways Leukemia graphite Transcription Pathways Leukemia graphite
12.5 years ago Hamid Bolouri ▴ 90
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5
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1.7k
views
predicting transcription factors
Transcription Transcription
updated 12.5 years ago by ▴ 750 • written 12.5 years ago by ▴ 380
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0
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1.3k
views
Biological Pathway Database
Transcription Pathways Category Transcription Pathways Category
12.6 years ago Gita Singh ▴ 10
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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Popular Question to Fred Hutch (Recruiting) ▴ 40
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