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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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20 months ago Maria Doyle ▴ 90
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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21 months ago Maria Doyle ▴ 90
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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21 months ago Maria Doyle ▴ 90
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News: BioCAsia, 5-6th December 2019, Sydney, Australia
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5.6 years ago Peter Hickey ▴ 750
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News: BioCAsia, 29-30th November 2018, Melbourne, Australia
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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7.0 years ago mnchoi67 ▴ 40
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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7.0 years ago mnchoi67 ▴ 40
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News: Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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8.9 years ago Martin Morgan 25k
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Help with neuroblastoma working group
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updated 9.5 years ago by 6.7k • written 9.5 years ago by ▴ 10
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Job: Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
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9.9 years ago Wolfgang Huber ★ 13k
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News: NGS data analysis training courses at EMBL-EBI
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10.0 years ago gr231 ▴ 10
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Beginner's guide to DESeq2 pdf link broken
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updated 10.2 years ago by 43k • written 10.3 years ago by • 0
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News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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10.3 years ago Thomas Girke ★ 1.7k
13 results • Page 1 of 1
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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10
Thank you so much for taking time to provide this clarification!
Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0
Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
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Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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