Showing : topaseq • reset
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Running deprecated packages
ToPASeq Deprecation
2.6 years ago pgauthi1 • 0
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1
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838
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SPIA function error in ToPASeq
topaseq
updated 6.4 years ago by 51k • written 6.4 years ago by ▴ 10
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1.1k
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SPIA function error in ToPASeq
ToPASeq SPIA pathway analysis R
6.6 years ago fawazfebin ▴ 60
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1.1k
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Problem in ToPASeq installation
topaseq
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 10
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1.8k
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failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
7.8 years ago jan.soderman • 0
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Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by ▴ 110
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Normalized count or Count data for ToPASeq package
rnaseq Topaseq
8.5 years ago saamar.rajput • 0
7 results • Page 1 of 1
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Comment: Appropriate ways to filter counts data for voom/limma by dorothylminter • 0
The proper way to filter count data for voom/limma emphasizes the importance of choosing the right filtering technique to enhance detection…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Comment: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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