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updated 6.5 years ago by
Gordon Smyth
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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…
Comment: Error in get_anno_data(ontology) : ontology not supported yet...
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GODseeker
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thank u so much ,god bless u,my dear friend.
Comment: Feature Counts - potential bug with outfile.jcounts
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chris2.a.white
•
0
Hi @gordonsmyth and @weishi,
Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
•
0
Hi Tim,
Thanks for your reply!
Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …
Answer: Error in get_anno_data(ontology) : ontology not supported yet...
by
Guido Hooiveld
★
4.1k
Did you check the help page for the function `enrichDO`? Type `?enrichDO`.
I am asking, because there it is stated that the argument `ont`…
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