Bioconductor Time-series

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time-series DESeq2 RNASeq timecoursedata TimeCourse

updated 20 months ago by ATpoint ★ 4.8k • written 20 months ago by Debebe • 0

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904

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DESeq2 time-series timecoursedata timecourse multifactorial

updated 2.4 years ago by Michael Love 43k • written 2.5 years ago by arshad1292 • 0

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1.1k

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time-series mfuzz replace=FALSE

2.9 years ago soda ▴ 80

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1.1k

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half-life DESeq2 time-series

updated 4.0 years ago by Michael Love 43k • written 4.1 years ago by Xianjun Dong ▴ 10

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2.4k

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deseq2 cancer rna-seq time-series

5.8 years ago mah19 • 0

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3.6k

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deseq2 time-series design matrix edger

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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deseq2 time-series without replicate

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by bahlv • 0

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1.6k

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deseq2 timecourse multiple time points time-series

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by zhangfei-123 • 0

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1.8k

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DESeq2 time-series

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by gtechbio ▴ 10

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

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Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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