Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
tcgabiolinks
•
reset
0
votes
1
reply
266
views
Error in retrieving clinical data
TCGAbiolinks
updated 11 days ago by
boidnoid
• 0 • written 17 days ago by
silickas
• 0
0
votes
1
reply
243
views
combining raw counts and estimated counts
RNASeqData
GEO
TCGAbiolinks
updated 10 weeks ago by
O'Brien
• 0 • written 10 weeks ago by
Noor
• 0
0
votes
7
replies
1.1k
views
How should I know which platforms are available for TCGA methylation?
TCGAbiolinks
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
xiaofeiwang198266
• 0
3
votes
3
replies
3.8k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 11 months ago by
snijesh
▴ 200 • written 7.4 years ago by
Ramiro Magno
▴ 100
0
votes
0
replies
457
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray
normalize450K
TCGAbiolinks
Normalization
MethylationArrayData
12 months ago • updated 11 months ago
Giovanni Calice
▴ 160
0
votes
0
replies
517
views
GDC slides download
TCGAbiolinks
12 months ago
jain72744
• 0
0
votes
4
replies
777
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks
Survival
updated 13 months ago by
Lluís Revilla Sancho
▴ 760 • written 13 months ago by
tirordep
• 0
0
votes
0
replies
503
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
13 months ago
Thalita
• 0
0
votes
1
reply
1.1k
views
Problems when running GDC_prepare in R
TCGAbiolinks
error
GDC_prepare
16 months ago
leon
• 0
0
votes
0
replies
455
views
Where/how are TCGAbiolinks colData column names sourced from?
clinical
TCGAbiolinks
20 months ago
BioInfoBeginnerrr
• 0
4
votes
8
replies
1.7k
views
TCGAbiolinks cannot find bcr_patient_barcode
TCGAbiolinks
21 months ago
Habil Zare
▴ 200
0
votes
2
replies
1.4k
views
RPPA data (Proteomics analysis)
TCGAbiolinks
limma
23 months ago • updated 22 months ago
qiz218591
• 0
1
vote
1
reply
1.1k
views
Error when running getGDCprojects()
TCGAbiolinks
24 months ago
DevelopingHippo
• 0
2
votes
1
reply
1.0k
views
How to identify the batch informations from the sample ID?
TCGAbiolinks
BatchQC
BatchEffect
updated 18 months ago by
wrab425
• 0 • written 2.0 years ago by
snijesh
▴ 200
0
votes
0
replies
996
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival
TCGAbiolinks
R
PAAD
2.0 years ago
Manav
• 0
1
vote
2
replies
2.2k
views
Error when running GDC_prepare
TCGAbiolinks
2.0 years ago
DevelopingHippo
• 0
1
vote
3
replies
1.3k
views
Some discrepancy between ED genes in cBioPortal vs DESeq2
DESeq2
TCGAbiolinks
2.2 years ago
Alexandre
• 0
0
votes
0
replies
694
views
TCGAbiolinks GDCprepare produces error in vectbl_as_col_location()
TCGAbiolinks
2.4 years ago
lescano
▴ 10
0
votes
0
replies
948
views
Query on TCGA
TCGAbiolinks
TCGAWorkflow
2.5 years ago
hemangininaik09
• 0
0
votes
2
replies
2.1k
views
Error with TCGA package - TCGAbiolinks
TCGAbiolinks
RNASeq
CancerData
updated 2.6 years ago by
Tiago C. Silva
▴ 270 • written 2.7 years ago by
JAcky
• 0
0
votes
0
replies
1.0k
views
About normalization of the datasets from Harmonized TCGA data
TCGAbiolinks
Proteomics
GENOMICS
bioinformatics
2.6 years ago
qiz218591
• 0
0
votes
0
replies
768
views
TCGAbiolinks file.type argument
TCGAbiolinks
2.6 years ago
Elizabeth
• 0
0
votes
0
replies
730
views
Merging two SummarizedExperiment dataesets after downloading using TCGAbiolinks
TCGAbiolinks
TCGAbiolinksGUI.data
SummarizedExperiment
2.8 years ago
syednajeebashraf
• 0
5
votes
4
replies
3.7k
views
HTSeq Counts no longer available
TCGAbiolinks
updated 2.8 years ago by
swbarnes2
★ 1.4k • written 2.9 years ago by
vm
▴ 30
0
votes
4
replies
1.4k
views
GDCdownload Directory Problem :(
TCGAWorkflowData
TCGAbiolinks
updated 12 months ago by
Marcel Ramos
700 • written 2.9 years ago by
Emre
• 0
0
votes
2
replies
2.5k
views
GDCprepare error in TARGET-AML data access
TCGAbiolinks
TARGET-AML
updated 2.9 years ago by
Tiago C. Silva
▴ 270 • written 2.9 years ago by
Лиза
• 0
0
votes
1
reply
2.2k
views
GDCprepare of STAR - counts
GeneExpression
TCGAbiolinks
updated 2.5 years ago by
Aurora
• 0 • written 2.9 years ago by
mahsa
• 0
3
votes
2
replies
2.6k
views
Difference in TCGA RNAseq expression values between GDC harmonized and legacy data
GDC
TCGA
tcgabiolinks
updated 2.9 years ago by
cute scientist
• 0 • written 6.3 years ago by
Antonio Ahn
▴ 10
4
votes
5
replies
2.0k
views
GDCprepare() can never complete request ("Error: cannot allocate vector")
TCGAbiolinks
TCGA
updated 2.9 years ago by
biologsr
• 0 • written 4.5 years ago by
aush
▴ 40
0
votes
0
replies
902
views
GDCquery error when querying mutect2 data
TCGAbiolinks
2.9 years ago
komal.rathi
▴ 120
0
votes
2
replies
2.6k
views
GDCprepare() - R Session Aborted
TCGAbiolinks
R
GDCprepare()
2.9 years ago • updated 2.4 years ago
spyrouglykeria
• 0
6
votes
3
replies
3.7k
views
GDCprepare of RNAseq counts produces error
TCGAbiolinks
updated 2.9 years ago by
Nikolas
• 0 • written 2.9 years ago by
lescano
▴ 10
2
votes
8
replies
6.1k
views
GDCquery_Maf error
TCGAbiolinks
GDCquery_Maf
updated 2.6 years ago by
1526466763
• 0 • written 2.9 years ago by
e.iich
• 0
0
votes
1
reply
1.2k
views
Compare TCGA-PAAD with GTEx gene expression
TCGAbiolinks
updated 7 days ago by
Jane
• 0 • written 3.2 years ago by
constantinosdem
• 0
0
votes
0
replies
979
views
TCGAAnalyze_DEA Issue, "Error in names"
miRNAseq
TCGAbiolinks
TCGAAnalyze_DEA
3.3 years ago
Gandino
• 0
0
votes
1
reply
2.7k
views
How to remove duplicate files per case in TCGAbiolonks
TCGAbiolinks
3.3 years ago
raf4
▴ 30
1
vote
2
replies
1.5k
views
Difficulty dowloading hg38 cnv data in tcgabiolinks
TCGAbiolinks
cnv
3.4 years ago • updated 3.3 years ago
raf4
▴ 30
0
votes
1
reply
1.8k
views
pre-proccessing of TCGA data for WGCNA
TCGAbiolinks
WGCNA
updated 3.5 years ago by
Michael Love
43k • written 3.5 years ago by
txtbookir
• 0
0
votes
0
replies
1.0k
views
DEGs for legacy and harmonized dataset
#DEGs
#legacydataset
#harmonizeddataset
TCGAbiolinks
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 3.6 years ago by
Gisele
• 0
0
votes
1
reply
1.5k
views
Help With TCGAbiolinks package
TCGAbiolinks
data
normalize
l
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 3.6 years ago by
DANIELA
• 0
0
votes
2
replies
1.6k
views
TCGA data Query (GDCquery): external_gene_name " are missing
TCGAbiolinks
3.8 years ago
H. Z. Amini
▴ 10
0
votes
0
replies
2.1k
views
TCGA-BRCA downloading issue by GDCquery
TCGAbiolinks
TCGAWorkflowData
3.8 years ago
H. Z. Amini
▴ 10
0
votes
0
replies
1.0k
views
Determine whether RNAseq data from TCGA is paired or single-end?
TCGA
TCGAbiolinks
3.8 years ago
rebeliscu
• 0
0
votes
3
replies
1.3k
views
discrepancy in number of samples
TCGAquery_recount2
TCGAbiolinks
3.9 years ago
xiaofeiwang18266
▴ 50
1
vote
1
reply
1.7k
views
Does DESeq2 need "scale_counts" for GTEx and TCGA data from recount2 (TCGAquery_recount2)?
TCGAbiolinks
RECOUNT2
DESeq2
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
xiaofeiwang18266
▴ 50
3
votes
8
replies
4.2k
views
error reading from connection (Error in load(url(con)))
TCGAbiolinks
3.9 years ago
xiaofeiwang18266
▴ 50
0
votes
0
replies
1.1k
views
Job:
Postdoc in computational cancer biology at IEO, Milan, Italy
TCGAbiolinks
BiomedicalInformatics
Network
3.9 years ago
martin.schaefer
• 0
0
votes
1
reply
1.1k
views
library(TCGAbiolinks)
TCGAbiolinks
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
1664424607
• 0
0
votes
1
reply
2.3k
views
TCGAbiolinks connection error for GDCquery
MethylationArray
TCGAbiolinks
4.2 years ago • updated 4.1 years ago
Sophie Marion de Proce
• 0
0
votes
1
reply
1.2k
views
Error in query for Genomics Data Commons
TCGAbiolinks
updated 4.2 years ago by
shepherl
4.1k • written 4.2 years ago by
sbetrosian
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy
by
Erik Wright
▴ 150
IDTAXA classification can be performed from training sets with or without assigned ranks. In this case it looks like `LearnTaxa()` was not …
Comment: Understanding "gene ratio" when using plotEnrich(c())
by
California Business Journal
• 0
Find the latest [California business articles][1] on California Business Journal, covering success stories, market trends, and expert insig…
Comment: GSEA using clusterprofileR
by
California Business Journal
• 0
California Business Journal is a trusted source in [California news media][1], delivering insightful stories on business trends and industr…
Comment: QLF or LRT in edgeR for paired sample designs?
by
California Business Journal
• 0
California Business Journal delivers the latest [California business news][1], featuring industry trends, company insights, and success sto…
Comment: How many of my genes from my gene list are in each KEGG pathway?
by
California Business Journal
• 0
[California Business Journal][1] helps small and medium-sized businesses grow by sharing their stories and providing publishing services fo…
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 760
Popular Question
to
tifaGis
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
ramiro.barrantes
▴ 10
Popular Question
to
shepherl
4.1k
Locations
• All
The city by the bay,
55 minutes ago
Türkiye,
2 hours ago
UPF, Barcelona, Spain,
3 hours ago
Pakistan,
4 hours ago
European Union,
5 hours ago
Traffic: 537 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6