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systempiper
•
reset
3
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2
replies
1.2k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.7 years ago
appropiate
• 0
0
votes
0
replies
639
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.7 years ago
appropiate
• 0
0
votes
1
reply
987
views
how to analysis chip-seq data
systemPipeR
updated 2.9 years ago by
dcassol
▴ 100 • written 2.9 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.4k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
tina
• 0
0
votes
0
replies
826
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.6 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.1k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.0 years ago
Deleted
▴ 70
0
votes
2
replies
1.4k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
6.2 years ago
rj.innet
• 0
0
votes
2
replies
1.3k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
6.2 years ago
rj.innet
• 0
0
votes
2
replies
805
views
systemARGS not found
systempiper
6.3 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.0k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
clarisbaby
• 0
0
votes
1
reply
1.3k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 7.2 years ago by
Thomas Girke
★ 1.7k • written 7.2 years ago by
tarun2
• 0
0
votes
2
replies
1.4k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.7 years ago
xuertowong
• 0
2
votes
3
replies
2.4k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 8.0 years ago by
Thomas Girke
★ 1.7k • written 8.0 years ago by
abass.conteh
• 0
1
vote
2
replies
2.2k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 8.1 years ago by
Thomas Girke
★ 1.7k • written 8.1 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.1k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.4 years ago
musa
▴ 10
0
votes
4
replies
1.6k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.5 years ago
A Gossner
▴ 50
0
votes
2
replies
1.8k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.8 years ago by
Thomas Girke
★ 1.7k • written 8.8 years ago by
setarosd
• 0
0
votes
4
replies
1.8k
views
systemPipeR with DESeq2
deseq2
systemPipeR
10.1 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
• 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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alexandre.blais
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