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systempipeR
•
reset
3
votes
2
replies
1.3k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.8 years ago
appropiate
• 0
0
votes
0
replies
654
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.8 years ago
appropiate
• 0
0
votes
1
reply
1.0k
views
how to analysis chip-seq data
systemPipeR
updated 3.0 years ago by
dcassol
▴ 100 • written 3.0 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.5k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
tina
• 0
0
votes
0
replies
844
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.7 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.2k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.1 years ago
Deleted
▴ 70
0
votes
2
replies
1.4k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
6.2 years ago
rj.innet
• 0
0
votes
2
replies
1.4k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
6.3 years ago
rj.innet
• 0
0
votes
2
replies
823
views
systemARGS not found
systempiper
6.4 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.0k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
clarisbaby
• 0
0
votes
1
reply
1.3k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 7.3 years ago by
Thomas Girke
★ 1.7k • written 7.3 years ago by
tarun2
• 0
0
votes
2
replies
1.4k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.8 years ago
xuertowong
• 0
2
votes
3
replies
2.4k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 8.1 years ago by
Thomas Girke
★ 1.7k • written 8.1 years ago by
abass.conteh
• 0
1
vote
2
replies
2.2k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 8.2 years ago by
Thomas Girke
★ 1.7k • written 8.2 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.2k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.5 years ago
musa
▴ 10
0
votes
4
replies
1.6k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.6 years ago
A Gossner
▴ 50
0
votes
2
replies
1.9k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.9 years ago by
Thomas Girke
★ 1.7k • written 8.9 years ago by
setarosd
• 0
0
votes
4
replies
1.8k
views
systemPipeR with DESeq2
deseq2
systemPipeR
10.2 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
freemanmclaughlin9969289
• 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc
by
Nan
• 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Answer: EuroBioC2023 abstract submission closing soon!
by
excess.gecko.shso
• 0
Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
Answer: EuroBioC2024 abstract submission is open!
by
excess.gecko.shso
• 0
EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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