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systemPipeR
•
reset
3
votes
2
replies
1.4k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
3.1 years ago
appropiate
• 0
0
votes
0
replies
692
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
3.1 years ago
appropiate
• 0
0
votes
1
reply
1.2k
views
how to analysis chip-seq data
systemPipeR
updated 3.3 years ago by
dcassol
▴ 100 • written 3.3 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.8k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
tina
• 0
0
votes
0
replies
924
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
6.0 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.5k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.4 years ago
Deleted
▴ 70
0
votes
2
replies
1.5k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
6.6 years ago
rj.innet
• 0
0
votes
2
replies
1.5k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
6.6 years ago
rj.innet
• 0
0
votes
2
replies
888
views
systemARGS not found
systempiper
6.7 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.2k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
clarisbaby
• 0
0
votes
1
reply
1.5k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 7.6 years ago by
Thomas Girke
★ 1.7k • written 7.6 years ago by
tarun2
• 0
0
votes
2
replies
1.4k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
8.1 years ago
xuertowong
• 0
2
votes
3
replies
2.5k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 8.4 years ago by
Thomas Girke
★ 1.7k • written 8.4 years ago by
abass.conteh
• 0
1
vote
2
replies
2.3k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 8.5 years ago by
Thomas Girke
★ 1.7k • written 8.5 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.4k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.8 years ago
musa
▴ 10
0
votes
4
replies
1.7k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.9 years ago
A Gossner
▴ 50
0
votes
2
replies
2.0k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 9.2 years ago by
Thomas Girke
★ 1.7k • written 9.2 years ago by
setarosd
• 0
0
votes
4
replies
1.9k
views
systemPipeR with DESeq2
deseq2
systemPipeR
10.5 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R
by
Charlie
• 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirect
• 0
https://www.www-njmcdirect.run/
Votes
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: biomaRt server error, and mirrors do not help
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