Bioconductor SystemPipeR

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systemPipeRdata systempipeR

2.9 years ago appropiate • 0

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666

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systemPipeRdata systemPipeR

2.9 years ago appropiate • 0

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1.1k

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systemPipeR

updated 3.1 years ago by dcassol ▴ 100 • written 3.1 years ago by Bioinformatics ▴ 30

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by tina • 0

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863

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predORF systemPipeR ORF prediction

5.8 years ago Mr.RB ▴ 20

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systempiper

6.2 years ago Deleted ▴ 70

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runCommandline systemPipeR bash

6.3 years ago rj.innet • 0

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systemPipeR rnaseq

6.4 years ago rj.innet • 0

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837

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systempiper

6.5 years ago kimberly.dickson • 0

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systempiper edger rna-seq

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by clarisbaby • 0

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systempiper R batchjobs

updated 7.4 years ago by Thomas Girke ★ 1.7k • written 7.4 years ago by tarun2 • 0

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R edger systemPipeR

7.9 years ago xuertowong • 0

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R rnaseq tophat summarizeoverlaps systempiper

updated 8.2 years ago by Thomas Girke ★ 1.7k • written 8.2 years ago by abass.conteh • 0

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systempiper run_edgeR

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by alexandr.gopanenko ▴ 50

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deseq2 systempiper Tutorial

8.6 years ago musa ▴ 10

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systempiper go term

8.7 years ago A Gossner ▴ 50

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 9.0 years ago by Thomas Girke ★ 1.7k • written 9.0 years ago by setarosd • 0

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deseq2 systemPipeR

10.3 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

Recent ...

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Comment: Csaw normalization strategies - general inquiry by Luca • 0

Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10

Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …

Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k

My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …

Answer: Csaw normalization strategies - general inquiry by Aaron Lun ★ 28k

IIUC you're saying that 68 and 71 are more similar to each other than to all of the other replicates (more efficient IP, if I'm reading you…

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Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

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