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systemPipeR
•
reset
3
votes
2
replies
1.2k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.7 years ago
appropiate
• 0
0
votes
0
replies
640
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.7 years ago
appropiate
• 0
0
votes
1
reply
990
views
how to analysis chip-seq data
systemPipeR
updated 2.9 years ago by
dcassol
▴ 100 • written 2.9 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.4k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
tina
• 0
0
votes
0
replies
827
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.6 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.1k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.0 years ago
Deleted
▴ 70
0
votes
2
replies
1.4k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
6.2 years ago
rj.innet
• 0
0
votes
2
replies
1.3k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
6.2 years ago
rj.innet
• 0
0
votes
2
replies
807
views
systemARGS not found
systempiper
6.3 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.0k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
clarisbaby
• 0
0
votes
1
reply
1.3k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 7.2 years ago by
Thomas Girke
★ 1.7k • written 7.2 years ago by
tarun2
• 0
0
votes
2
replies
1.4k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.7 years ago
xuertowong
• 0
2
votes
3
replies
2.4k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 8.1 years ago by
Thomas Girke
★ 1.7k • written 8.1 years ago by
abass.conteh
• 0
1
vote
2
replies
2.2k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 8.1 years ago by
Thomas Girke
★ 1.7k • written 8.1 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.1k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.4 years ago
musa
▴ 10
0
votes
4
replies
1.6k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.5 years ago
A Gossner
▴ 50
0
votes
2
replies
1.8k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.8 years ago by
Thomas Girke
★ 1.7k • written 8.8 years ago by
setarosd
• 0
0
votes
4
replies
1.8k
views
systemPipeR with DESeq2
deseq2
systemPipeR
10.1 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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sap275
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mhem
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Anna
▴ 20
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