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systemPipeR
•
reset
3
votes
2
replies
1.3k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
3.0 years ago
appropiate
• 0
0
votes
0
replies
680
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
3.0 years ago
appropiate
• 0
0
votes
1
reply
1.1k
views
how to analysis chip-seq data
systemPipeR
updated 3.2 years ago by
dcassol
▴ 100 • written 3.2 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.7k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
tina
• 0
0
votes
0
replies
897
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.9 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.3k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.3 years ago
Deleted
▴ 70
0
votes
2
replies
1.4k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
6.5 years ago
rj.innet
• 0
0
votes
2
replies
1.4k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
6.5 years ago
rj.innet
• 0
0
votes
2
replies
872
views
systemARGS not found
systempiper
6.6 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.1k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
clarisbaby
• 0
0
votes
1
reply
1.4k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 7.5 years ago by
Thomas Girke
★ 1.7k • written 7.5 years ago by
tarun2
• 0
0
votes
2
replies
1.4k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
8.0 years ago
xuertowong
• 0
2
votes
3
replies
2.5k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 8.3 years ago by
Thomas Girke
★ 1.7k • written 8.3 years ago by
abass.conteh
• 0
1
vote
2
replies
2.3k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 8.4 years ago by
Thomas Girke
★ 1.7k • written 8.4 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.3k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.7 years ago
musa
▴ 10
0
votes
4
replies
1.7k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.8 years ago
A Gossner
▴ 50
0
votes
2
replies
1.9k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 9.1 years ago by
Thomas Girke
★ 1.7k • written 9.1 years ago by
setarosd
• 0
0
votes
4
replies
1.8k
views
systemPipeR with DESeq2
deseq2
systemPipeR
10.4 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
AB
▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac
by
DENG
• 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table
by
shepherl
4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
shepherl
4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file
by
shocked.tick.zyet
• 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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to
shepherl
4.1k
Popular Question
to
James W. MacDonald
68k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
AB
▴ 110
Popular Question
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Lluís Revilla Sancho
▴ 760
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