Bioconductor Svaseq

Showing : svaseq • reset

votes

replies

488

views

DESeq2 Normalisation Bulkrnaseq Svaseq

6 months ago BioinfGuru ▴ 70

votes

852

views

RUVSeq svaseq

2.5 years ago • updated 2.4 years ago Tongjun • 0

votes

replies

1.3k

views

RNASeq sva svaseq

updated 2.9 years ago by James W. MacDonald 67k • written 2.9 years ago by Bex • 0

votes

replies

982

views

limma sva Leafcutter SVAseq

3.2 years ago georgia.katsoula ▴ 40

votes

958

views

sva svaseq surrogate variable analysis

updated 4.7 years ago by James W. MacDonald 67k • written 4.7 years ago by Mozart ▴ 30

vote

1.1k

views

svaseq sva

5.8 years ago flippy23 • 0

vote

1.0k

views

MEDIPS svaseq sva

updated 5.9 years ago by Lukas Chavez ▴ 570 • written 5.9 years ago by tofukaj • 0

votes

replies

1.9k

views

deseq2 svaseq

5.9 years ago bioinfo • 0

votes

replies

1.8k

views

edger sva svaseq limma

updated 6.6 years ago by Ryan C. Thompson ★ 7.9k • written 6.6 years ago by cats_dogs ▴ 20

vote

replies

3.6k

views

DESeq2 sva svaseq batch effect correction

6.9 years ago L_K • 0

votes

replies

1.3k

views

svaseq batcheffectcorrection

7.1 years ago burcu.atasu • 0

vote

1.7k

views

ruvseq svaseq edaseq

updated 7.1 years ago by davide risso ▴ 980 • written 7.1 years ago by llo ▴ 10

votes

replies

1.4k

views

sva svaseq batch effect batch effects batch effect correction

7.4 years ago vedran.franke • 0

vote

replies

1.9k

views

deseq2 svaseq

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by gpalidwor ▴ 10

votes

replies

2.0k

views

sva svaseq

updated 7.5 years ago by Guido Hooiveld ★ 4.1k • written 7.5 years ago by wamiqsaifi • 0

votes

replies

2.7k

views

limma sva svaseq

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by Bogdan ▴ 670

votes

replies

2.0k

views

svaseq dexseq

updated 7.9 years ago by Alejandro Reyes ★ 1.9k • written 7.9 years ago by tofukaj • 0

votes

replies

2.8k

views

svaseq combat sva RANseq batcheffect removebatcheffect

updated 8.2 years ago by Jakub ▴ 50 • written 8.2 years ago by amoltej ▴ 10

votes

replies

5.8k

views

deseq2 svaseq

8.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

votes

2.0k

views

deseq2 sva svaseq

updated 8.3 years ago by Michael Love 43k • written 8.3 years ago by szenitha ▴ 20

votes

replies

2.8k

views

sva svaseq batcheffectcorrection

updated 8.4 years ago by Jeff Leek ▴ 650 • written 8.4 years ago by szenitha ▴ 20

vote

replies

4.0k

views

deseq2 sva svaseq pca

8.5 years ago Peter Alto ▴ 10

22 results • Page 1 of 1

Recent ...

Replies

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

Awards • All