Bioconductor Sushi

Showing : sushi • reset

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sushi bed

6.5 years ago maltethodberg ▴ 180

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883

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sushi plotGenes

7.2 years ago portia.mcghan • 0

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sushi

8.5 years ago snamjoshi87 ▴ 40

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1.3k

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sushi plotBed data.frame

9.0 years ago waqasnayab • 0

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sushi plotBed

updated 9.0 years ago by dphansti ▴ 10 • written 9.2 years ago by Dimitris Polychronopoulos ▴ 80

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1.2k

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Sushi

updated 9.0 years ago by dphansti ▴ 10 • written 9.0 years ago by Till ▴ 30

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R sushi

updated 9.2 years ago by dphansti ▴ 10 • written 9.2 years ago by javier.mendoza • 0

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1.9k

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sushi

updated 9.6 years ago by Steve Lianoglou ★ 13k • written 9.6 years ago by Bogdan ▴ 670

8 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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