Bioconductor Sushi

Showing : sushi • reset

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952

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sushi bed

6.3 years ago maltethodberg ▴ 180

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852

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sushi plotGenes

7.0 years ago portia.mcghan • 0

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1.1k

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sushi

8.3 years ago snamjoshi87 ▴ 40

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1.3k

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sushi plotBed data.frame

8.8 years ago • updated 8.7 years ago waqasnayab • 0

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1.3k

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sushi plotBed

updated 8.8 years ago by dphansti ▴ 10 • written 9.0 years ago by Dimitris Polychronopoulos ▴ 80

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1.1k

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Sushi

updated 8.8 years ago by dphansti ▴ 10 • written 8.8 years ago by Till ▴ 30

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2.3k

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R sushi

updated 9.0 years ago by dphansti ▴ 10 • written 9.0 years ago by javier.mendoza • 0

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1.8k

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sushi

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by Bogdan ▴ 670

8 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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