Bioconductor Subset

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1.2k

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R subset DifferentialExpression

updated 2.4 years ago by Basti ▴ 780 • written 2.4 years ago by Manav • 0

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1.7k

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VariantAnnotation subset ScanVcfParam

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by Dario Strbenac ★ 1.6k

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2.5k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.8 years ago Ruichao.Zeng ▴ 20

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1.2k

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flowStats newbie split subset flowCore

6.4 years ago yulia.chupalova • 0

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2.4k

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deseq2 maplot subset

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by rbronste ▴ 60

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3.0k

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probe filter subset gene symbol affy

10.0 years ago alakatos ▴ 130

6 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

Votes

A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to maltethodberg ▴ 180