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1.2k

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R subset DifferentialExpression

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Manav • 0

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1.8k

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VariantAnnotation subset ScanVcfParam

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by Dario Strbenac ★ 1.6k

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2.6k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

6.0 years ago Ruichao.Zeng ▴ 20

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flowStats newbie split subset flowCore

6.6 years ago yulia.chupalova • 0

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2.6k

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deseq2 maplot subset

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by rbronste ▴ 60

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3.0k

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probe filter subset gene symbol affy

10.1 years ago alakatos ▴ 130

6 results • Page 1 of 1

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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Votes

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

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