Bioconductor Subset

Showing : subset • reset

votes

1.2k

views

R subset DifferentialExpression

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Manav • 0

votes

replies

1.8k

views

VariantAnnotation subset ScanVcfParam

updated 5.0 years ago by Martin Morgan 25k • written 5.0 years ago by Dario Strbenac ★ 1.6k

votes

replies

2.6k

views

TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.9 years ago Ruichao.Zeng ▴ 20

vote

replies

1.3k

views

flowStats newbie split subset flowCore

6.6 years ago yulia.chupalova • 0

votes

2.5k

views

deseq2 maplot subset

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by rbronste ▴ 60

votes

replies

3.0k

views

probe filter subset gene symbol affy

10.1 years ago alakatos ▴ 130

6 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All