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News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
9 months ago
shepherl
4.1k
0
votes
0
replies
945
views
News:
New Package Submission Deadline for Bioc Release 3.14
newpackage
Deadline
Release
Submission
3.1 years ago
shepherl
4.1k
0
votes
2
replies
1.1k
views
Confusion error from automated checks for package submission
package
submiss
Submission
updated 3.5 years ago by
Hervé Pagès
16k • written 3.5 years ago by
sara.stankiewicz
• 0
1
vote
1
reply
1.0k
views
Recommended logging/logger for bioconductor package submission.
Submission
updated 3.5 years ago by
Lluís Revilla Sancho
▴ 760 • written 3.5 years ago by
MatthaeusCaesar
• 0
0
votes
1
reply
1.2k
views
News:
Bioconductor 3.13 New Package Submission Deadline
release
Submission
newpackage
Release
Deadline
3.6 years ago • updated 3.5 years ago
shepherl
4.1k
1
vote
0
replies
1.2k
views
News:
New Package Submission Deadline for Bioc Release 3.12
release
new package
submission
deadline
News
4.1 years ago
shepherl
4.1k
0
votes
3
replies
1.3k
views
News:
New Package Submission Workflow Updates!
new packages
submission
bioconductor
News
updated 3.3 years ago by
jonathan.dekermanjian
• 0 • written 4.3 years ago by
shepherl
4.1k
2
votes
2
replies
1.0k
views
Does the 10 minute CMD check time limit include unit testing?
new package
submission
4.9 years ago
Krutik Patel
▴ 10
0
votes
0
replies
731
views
News:
Single Package Builder for New Package Submissions
new package
submission
release
News
5.0 years ago
shepherl
4.1k
1
vote
1
reply
820
views
Is ECIS Data within BioConductor's remit?
Submission
ECIS
Bioconductor Scope
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
jhuc964
▴ 10
0
votes
1
reply
1.4k
views
How to submit a package hosted on Bitbucket
package
submission
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
richierocks
▴ 40
1
vote
0
replies
4.2k
views
News:
New Package Submission Process
submission
News
8.4 years ago
Dan Tenenbaum
★ 8.2k
7
votes
6
replies
2.2k
views
Help to find Volunteer who can review my bioconductor package before submission ?
r packages
submission
8.7 years ago
Jurat Shahidin
▴ 80
13
votes
1
reply
3.1k
views
News:
Updated Bioconductor Package Submission Policy
package
submission
News
8.8 years ago
Martin Morgan
25k
14 results • Page
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
Gordon Smyth
51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Comment: Adjusted p-values become NA when sub-setting samples
by
txema.heredia
• 0
Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…
Answer: DESeq2 interaction between cancer cells and microenvironment cells
by
Michael Love
42k
I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Fahd
• 0
Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
Yes, I understand the implications of replacing the `OrgDb` packages in release. Maybe an upload to the annotationHub or GitHub could be an…
Votes
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
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