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subjunc
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1.1k
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'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 20 months ago by
ATpoint
★ 4.7k • written 20 months ago by
Sukeerthi
• 0
3
votes
6
replies
2.8k
views
How to use subjunc for differential splicing analysis?
subjunc
edgeR
3.1 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
5
replies
3.3k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 4.7 years ago by
James W. MacDonald
68k • written 4.7 years ago by
abano
• 0
3
votes
1
reply
1.6k
views
Use BAM file created from subjunc function (Rsubread package) for feature counts?
rsubread
subjunc
updated 9.6 years ago by
Wei Shi
★ 3.6k • written 9.6 years ago by
Stephen Piccolo
▴ 600
0
votes
1
reply
1.5k
views
How to interpret the fusion.txt file output from subjunc (Rsubread package)
rsubread
subjunc
rnaseq
fusion genes
updated 9.7 years ago by
Wei Shi
★ 3.6k • written 9.7 years ago by
misic
• 0
9
votes
4
replies
3.2k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
10.3 years ago
Wei Shi
★ 3.6k
2
votes
2
replies
1.4k
views
Failed assertion in subjunc aligner for large indels
rnaseq
subjunc
indel
updated 10.3 years ago by
Wei Shi
★ 3.6k • written 10.3 years ago by
daniel.silvestre
▴ 100
7 results • Page
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Comment: how many significant figures are there in DESeq2 output
by
ATpoint
★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression
by
Jane
• 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga
by
Jane
• 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
by
Matthew McCormack
▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
ATpoint
★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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